View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_19 (Length: 373)
Name: NF18411_low_19
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 45735253 - 45734909
Alignment:
| Q |
1 |
ttctatatatgtttgcacatggctcattattatatatgagtttcattttgatagacgttagtgtaaaataatacatcaacaaatcccaaaactagttatg |
100 |
Q |
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| T |
45735253 |
ttctatatatgtttgcacatggcccattattatatatgagtttcattttgatagacgtcagtgtaaaataatacatcaacaaatcccaaaactagttatg |
45735154 |
T |
|
| Q |
101 |
attgaaatctaacgttttgaatacgacaataatgaccgattaacaatatatttnnnnnnntccaaagnnnnnnncaatataannnnnnncacatagacga |
200 |
Q |
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| T |
45735153 |
attgaaatctaacgttttgaatatgacaataatgaccgattaataatatatttcccccc-tccaaagaaaaaaacaatataatttttttcacatagacga |
45735055 |
T |
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| Q |
201 |
ctgacgattaggattgattgataatataagattgacttacacaggaaaagcaaaagaatcagtactgccttcagattggacaaattcccttgattctgca |
300 |
Q |
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| T |
45735054 |
ctgacgattaggattgattgataatataagattgacttacacaggaaaagcaaaagaatcagtactgccttcagattggacacattcccttgattctgca |
45734955 |
T |
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| Q |
301 |
aatgtcatctcatagtcttcaattccctcaacctgccgaaattaag |
346 |
Q |
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| T |
45734954 |
aatgtcatctcatagtcttcaattccctcaacctgccaaaattaag |
45734909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 45746313 - 45746179
Alignment:
| Q |
202 |
tgacgattaggattgattgataatataagattgacttacacaggaaaagcaaaagaatcagtactgccttcagattggacaaattcccttgattctgcaa |
301 |
Q |
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| T |
45746313 |
tgacgattatgattgattgataatataagattgacttacacagggaaagcaaaagaatcagtactgccttcagattggacagagtcccttgattttgcaa |
45746214 |
T |
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| Q |
302 |
atgtcatctcatagtcttcaattccctcaacctgc |
336 |
Q |
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| T |
45746213 |
atgacatctcatagtcttcaattccctcaacctgc |
45746179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 45746485 - 45746367
Alignment:
| Q |
33 |
tatatgagtttcattttgatagacgttagtgtaaaataatac-atcaacaaatcccaaaactagttatgattgaaatctaacgttttgaatacgacaata |
131 |
Q |
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||||||||||| |||| |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45746485 |
tatatgagtttaatttagatacacgttagtgtaaaataacaccatcaacaaatcacaaaactagttatgattgaaatctaacgttttgaatatgacaata |
45746386 |
T |
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| Q |
132 |
atgaccgattaacaatata |
150 |
Q |
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| T |
45746385 |
atgaccgattaacaatata |
45746367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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