View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_21 (Length: 367)
Name: NF18411_low_21
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 351
Target Start/End: Original strand, 46455201 - 46455549
Alignment:
| Q |
7 |
aaaggccaagaaaaaagtgctagggactcaacaggaaaggaaaaaattacttggagttcattcattgatgtgaattaacacaaattgatagagacccgag |
106 |
Q |
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| T |
46455201 |
aaaggccaagaaaaaagtgctagggactcaacaggaaaggaaaaaattacttggagttcattcattgatgtgaattaacacaaattgatagagacccgag |
46455300 |
T |
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| Q |
107 |
tattagggataaggaaaagaagggtgaatagatgtgggtgaatttacatctttgactctaccnnnnnnnnn---cttttaatagtttgtgtgttattgtt |
203 |
Q |
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| T |
46455301 |
tattagggataaggaaaagaagggtgaatagatgtgggtgaatttacatatttgactctaccttttttttttttcttttaatagtttgtgtgttattgtt |
46455400 |
T |
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| Q |
204 |
aacatttttcaaacatgaacttgtttg-acgtagatgttaaaggatgctatttgagacaaaaaataagaaatcttaagctagttttatcgctattaacgt |
302 |
Q |
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| T |
46455401 |
aacatttttcaaacatgaacttgtttggacgtagatgttaaaggatgctatttgagacaaaaaataagaaatcttaagctagttttatcgctattaacgt |
46455500 |
T |
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| Q |
303 |
ggcttaactacactaggtaaaaaccaccaccgcaaatggttatttgttt |
351 |
Q |
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| T |
46455501 |
ggcttaactacactaggtaaaaaccaccaccccaaatggttatttgttt |
46455549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 3511023 - 3510982
Alignment:
| Q |
89 |
aattgatagagacccgagtattagggataaggaaaagaaggg |
130 |
Q |
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| T |
3511023 |
aattgatagagacccgagtaagagggataaggaaaagaaggg |
3510982 |
T |
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