View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18411_low_24 (Length: 332)
Name: NF18411_low_24
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 37020796 - 37021095
Alignment:
| Q |
18 |
atgaagtagtaatcaaaatcaaagtagattctagtatcaacaacaacatacttagatctaagtgtaatgaaaaccacaaacataatcaaaacaacaaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37020796 |
atgaagtagtaatcaaaatcaaagtagattttagtatcaacaacaacatacctagatttaagtgtaatgaaaaccacaaacataatcaaaacaacaaaga |
37020895 |
T |
|
| Q |
118 |
tataagagaccagtattagagaaaaccaacacactaatatatttgtatagctagttcggatcaatatgtcagacatctgaagagagaacaaatcttcaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37020896 |
tataagagaccagtattagagaaaaccaacacactaatatatttgtatagctagttcggatcaatatgtcagacatctgaagagagaacaaatcttcaat |
37020995 |
T |
|
| Q |
218 |
ccactatgatatagtgcatgttacaaagaggatacaagaaattagatcacaatctcacgaagaataaaccataatttttaccattttgtcaagtcagtca |
317 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37020996 |
ccactatgatatagtgcgtgttacaaagaggatacaagaaattagatcacaatctcacgaagaataaaccataatttctaccattttgtcaagtcagtca |
37021095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 37043434 - 37043568
Alignment:
| Q |
21 |
aagtagtaatcaaaatcaaagtagattctagtatcaacaacaacatacttagatctaagtgtaatgaaaaccacaaacataatcaaaacaacaaagatat |
120 |
Q |
| |
|
|||||||| ||||| ||||| || ||| |||| ||||||||| |||||||||||||| || | |||||| |||||||||| |||| |||||||| || |
|
|
| T |
37043434 |
aagtagtagtcaaactcaaattaacttcaagtaacaacaacaatatacttagatctaaccgtgaagaaaacaacaaacataaccaaaccaacaaag--at |
37043531 |
T |
|
| Q |
121 |
aagagaccagtattagagaaaaccaacacactaatat |
157 |
Q |
| |
|
|||||| || ||||||||||||||||||||| ||||| |
|
|
| T |
37043532 |
aagagagcaatattagagaaaaccaacacacaaatat |
37043568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 45685979 - 45685932
Alignment:
| Q |
18 |
atgaagtagtaatcaaaatcaaagtagattctagtatcaacaacaaca |
65 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| || ||||||||||||| |
|
|
| T |
45685979 |
atgaagtagtaatcaaaatcaatgtagtttcaagcatcaacaacaaca |
45685932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University