View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_25 (Length: 327)
Name: NF18411_low_25
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 49664357 - 49664659
Alignment:
| Q |
12 |
gagatgaatgagattagtggcagaatcataaattttcggataagcagtgcagtaatcatatattcaaacgagagttttgaaaaaactacgtaatgaacat |
111 |
Q |
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| T |
49664357 |
gagatgaatgagattagtggcagaatcataaattttcggataagcagtgcagtaatcatatattcaaacgagagttttgaaaaaactacataatgaacat |
49664456 |
T |
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| Q |
112 |
acataaa-tatgtcggggagtctgaaaacggtgtaattaacataaagtacattgcgggagtctgaaagctacaatagactaatgatcaggaccatcaaaa |
210 |
Q |
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| T |
49664457 |
acataaaatatgtcggggagtctgaaaacggtgtaattaacataaagtacattgcgggagtctgaaagctacaacagactaatgatcaggaccatcaaaa |
49664556 |
T |
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| Q |
211 |
aaccgggacatcacatcttcacccaaaattttaagagattgattgagtatgtgagtcaccgttatatatatcggtcatatggcttaaatatagtggatgt |
310 |
Q |
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| T |
49664557 |
aaccgggacatcacatcttcacccaaaattttaagagattgattgagtatgtgagtcaccgttatatatatcggtcatatagcttaaatatagtggatgt |
49664656 |
T |
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| Q |
311 |
tag |
313 |
Q |
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||| |
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| T |
49664657 |
tag |
49664659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 135 - 310
Target Start/End: Complemental strand, 50938105 - 50937935
Alignment:
| Q |
135 |
aaaacggtgtaattaacataaagtacattgcgggagtctgaaagctacaatagactaatgatcaggaccat--caaaaaaccgggacatcacatcttcac |
232 |
Q |
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||||| ||||||||| || ||| ||||||| ||||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50938105 |
aaaactgtgtaattatcaaaaa-tacattgggggagtccgaaagcaacaacagactaatgatcaggaccataaaaaaaaaccgggacatcacatcttcac |
50938007 |
T |
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| Q |
233 |
ccaaaattttaagagattgattgagtatgtgagtcaccgttatatatatcggtcatatggcttaaatatagtggatgt |
310 |
Q |
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|||||||| |||| ||||||||| ||||||||| | ||||||| |||||||| ||||| ||||||||||| |
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| T |
50938006 |
ccaaaattcgaaga----aattgagtatatgagtcacc--tctatatattggtcatatagcttattcatagtggatgt |
50937935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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