View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_26 (Length: 320)
Name: NF18411_low_26
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 19597617 - 19597310
Alignment:
| Q |
1 |
ttctaatgcaccaccatcttcatcaaagaaaccactaccttcttcatcagagaaaccaccatcttcactgcagccacatcaatcttcactgccaccaagg |
100 |
Q |
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| T |
19597617 |
ttctaatgcaccaccatcttcatcaaagaacccacta---tcttcatcagagaaaccaccatcttcactgcagccacagcaatcttcattgccacgaagg |
19597521 |
T |
|
| Q |
101 |
ccattttcattcctgcgaagaagaacgcaatctttaacggagctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatcatt |
200 |
Q |
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| T |
19597520 |
ccgttttcattcctgcgaagaagaacgcaatctttaacggagctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatcatt |
19597421 |
T |
|
| Q |
201 |
ctattctaccaacaaatctgtcgctggtaccatcttcttcatcacagccacctcgaacactgtattatgatatggtaccgtattggccactacgaccacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19597420 |
ctattctaccaacaaatctgtcgctggtaccatcttcttcatcacagccacctcgaacactgtattataatatggtaccgtattggccactacgaccacc |
19597321 |
T |
|
| Q |
301 |
ttgttattctt |
311 |
Q |
| |
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|||||| |||| |
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| T |
19597320 |
ttgttactctt |
19597310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 19592874 - 19592817
Alignment:
| Q |
141 |
agctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatca |
198 |
Q |
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|||||||||| ||||||||| |||||| |||| |||||| ||||| |||||||||||| |
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| T |
19592874 |
agctaccatcccaatccaatgcaccattttcaacgcagcgaccacaaccaccatatca |
19592817 |
T |
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