View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_27 (Length: 303)
Name: NF18411_low_27
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 5678183 - 5677907
Alignment:
| Q |
17 |
agagtaatgatttcttaatcttgtaagatgtcacttgtcaatcaattgttaatgtttatttgttacaaaacatgtcatgnnnnnnnctttctgtctcaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5678183 |
agagtaatgatttcttaatcttgtaagatgtcacttgtcaatcaattgttaatgtttatttgttacaaaacatgtcatgtttttttctttctgtctcaat |
5678084 |
T |
|
| Q |
117 |
atataacttgaatttgaaagcaagatgttacatatgtttttatgactgattaaaagtgcaaaaaagctttatatgacagtgtgtatgaattaaattcgtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5678083 |
atataacttgaatttgaaagcaagatgttacatatgtttttatgactgattaaaagtgcaaaaaaactttatatgacagtgtgtatgaattaaattcgtt |
5677984 |
T |
|
| Q |
217 |
gcagtatccattagtctccaagtgtggatacattcggaaactcgtctcagaatctaatgactcggacgtgtcctttg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5677983 |
gcagtatccattagtctccaagtgtggatacattcggaaactcgtctcagaatctaatgactcggacgtgtcctttg |
5677907 |
T |
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