View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_29 (Length: 296)
Name: NF18411_low_29
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 129 - 280
Target Start/End: Complemental strand, 36345645 - 36345494
Alignment:
| Q |
129 |
caaatactaaccattattgtgcatattggtcaggcttaggtgcaatttggaatggcaacgaaggagaaaacaatgacggatgtggtgatggaatagaggg |
228 |
Q |
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| T |
36345645 |
caaatactaaccattattgtgcatattggtcagacttaggtgcaatctggaatggcaacaaaggagaaaacaatgacggatgtggtgatggaatagaggg |
36345546 |
T |
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| Q |
229 |
tcattgtgaaaaagggtatgtcgatgtaacatggcagaaggaccatacttgg |
280 |
Q |
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| T |
36345545 |
tcattgtggaaaagggtatatcgatgtaacatggcagaaggaccatacttgg |
36345494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 129 - 259
Target Start/End: Complemental strand, 36337071 - 36336941
Alignment:
| Q |
129 |
caaatactaaccattattgtgcatattggtcaggcttaggtgcaatttggaatggcaacgaaggagaaaacaatgacggatgtggtgatggaatagaggg |
228 |
Q |
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| T |
36337071 |
caaatactaactattgttgtgcatactggtcttgcttaggtgcaattttgaagggcaacgaagggaaaagcaatgacggttgtggtgatggaatagagat |
36336972 |
T |
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| Q |
229 |
tcattgtgaaaaagggtatgtcgatgtaaca |
259 |
Q |
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| T |
36336971 |
tcattgtagaaaagggtatgtcgatggaaca |
36336941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 36305525 - 36305434
Alignment:
| Q |
161 |
ggcttaggtgcaatttggaatggcaacgaaggagaaaacaatgacggatgtggtgatggaatagagggtcattgtgaaaaagggtatgtcga |
252 |
Q |
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| T |
36305525 |
ggcttaggtgcaatcaggaatggcaacaaagggaaaaacaatgacgggtgtggtgatggaatagagggtcattgtggaaaagggtatgtcga |
36305434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 36308889 - 36308785
Alignment:
| Q |
145 |
ttgtgcatattggtcaggcttaggtgcaatttggaatggcaacgaaggagaaaacaatgacggatgtggtgatggaatagagggtcattgtgaaaaaggg |
244 |
Q |
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| T |
36308889 |
ttgtgcatattggtcgggcttaggtgcaatctggaatggcaacaaagggaaaaacaatgacgggtatggtgatggaatagagggtcatagtggaaaggag |
36308790 |
T |
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| Q |
245 |
tatgt |
249 |
Q |
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||||| |
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| T |
36308789 |
tatgt |
36308785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 36322856 - 36322749
Alignment:
| Q |
145 |
ttgtgcatattggtcaggcttaggtgcaatttggaatggcaacgaaggagaaaacaatgacggatgtggtgatggaatagagggtcattgtgaaaaaggg |
244 |
Q |
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| T |
36322856 |
ttgtgcatactggtcgggcttaggtgcaatctggaatggcaaaaaagggaaaaacattgatgggtttgttgatggaatagagggtcattgtggaaaaggg |
36322757 |
T |
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| Q |
245 |
tatgtcga |
252 |
Q |
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|||||||| |
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| T |
36322756 |
tatgtcga |
36322749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36345773 - 36345710
Alignment:
| Q |
1 |
attggttaagcagaggtataatattgcaaggcggcgatagaaacacaaacgagtttggtggtag |
64 |
Q |
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| T |
36345773 |
attggctaagcagaggtacaatattgcaaggcggcgatagaaacacaaacgagtttggttgtag |
36345710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 36307766 - 36307714
Alignment:
| Q |
10 |
gcagaggtataatattgcaaggcggcgatagaaacacaaacgagtttggtggt |
62 |
Q |
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| T |
36307766 |
gcagaggtacaatattgcaagccggctatagaaacacaaacgagtgtggtggt |
36307714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 36327778 - 36327746
Alignment:
| Q |
22 |
tattgcaaggcggcgatagaaacacaaacgagt |
54 |
Q |
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| T |
36327778 |
tattgcaaggcggcgatagaaacacaaacgagt |
36327746 |
T |
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