View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_31 (Length: 281)
Name: NF18411_low_31
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 41980693 - 41980428
Alignment:
| Q |
1 |
ctgaaaaggagccgaattattttccgatgaagctttaccaaacggcggtgacgacggaggaggagacattggagtacgaattgagtgtggacgcgaagat |
100 |
Q |
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| T |
41980693 |
ctgaaaaggagccgaattattttccgatgaagctttaccaaacggcggtgacgacggaggaggagacattggagtacgaattgagtgtggacgcgaagat |
41980594 |
T |
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| Q |
101 |
ggactatatggtgtggctgcatttcgcggagattgattcgagtgtgaaaaaagaaggagagagagtttttgatgtgtttatcaatggaaacaatgtaaca |
200 |
Q |
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| T |
41980593 |
ggactatatggtgtggctgcatttcgcggagattgattcgagtgtgaaaaaagaaggagagagagtttttgatgtgtttatcaatggaaacaatgtaaca |
41980494 |
T |
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| Q |
201 |
agagtcgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactgtgaaaaat |
266 |
Q |
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| T |
41980493 |
agagttgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactgtgaaaaat |
41980428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 262
Target Start/End: Original strand, 22084350 - 22084453
Alignment:
| Q |
159 |
gagagagtttttgatgtgtttatcaatggaaacaatgtaacaagagtcgatatttacaaagaagtgggaagttttgctgcttttacttggcattatactg |
258 |
Q |
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| T |
22084350 |
gagagggtgtttgatgtgttcatcaatggtgataatttgactagagtagatatttacaaacaagttgggggtttagctgcgtttacttggcatcatacag |
22084449 |
T |
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| Q |
259 |
tgaa |
262 |
Q |
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|||| |
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| T |
22084450 |
tgaa |
22084453 |
T |
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