View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_34 (Length: 267)
Name: NF18411_low_34
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 5525865 - 5526104
Alignment:
| Q |
15 |
attaatcaatattgagataattatttcaccaaactgagttggtgctggtatattgcatctgttaaa-tttaagccatgaaataatgaaatgagttatgag |
113 |
Q |
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| T |
5525865 |
attaatcaatattgagataattatttcaccaaactgagttggtgctggtatattgcatctgttaaactttaagccatgaaataatgaaatgagttatgag |
5525964 |
T |
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| Q |
114 |
aataatagatgtattcatgtagctgtcagttagcttgcttgcccaacctatgggtgcatcacctacttcgtgtttattttagcttggccccattctctac |
213 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5525965 |
aataatagatgtattaatgtagctgtcagttagcttgcttgcccaacctatgggtgcatcacctacttcgtgtttattttagcctggccccattctctac |
5526064 |
T |
|
| Q |
214 |
tttgtagagcaaacattaaaaaccatgtcccctcgtaccc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5526065 |
tttgtagagcaaacattaaaaaccatgtcccctcgtaccc |
5526104 |
T |
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