View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_4 (Length: 714)
Name: NF18411_low_4
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_4 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 20 - 703
Target Start/End: Complemental strand, 45063373 - 45062690
Alignment:
| Q |
20 |
tcaaacacgctattcatcaatggcagaagtcgaaatgcgtgatgccgaaacctttgcattccaggctgagatcaaccaacttctcagtctcatcatcaac |
119 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45063373 |
tcaaacacgctattcatcaatggcagaattcgaaatgtgtgacaccgaaacctttgcattccaggctgagatcaaccaacttctcagtctcatcatcaac |
45063274 |
T |
|
| Q |
120 |
actttttacagtaacaaagagattttccttcgtgagctcatcagcaatgcctccgacgtcagtttttcttattcttcattttctatttcttttggtcgca |
219 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45063273 |
actttttacagcaacaaagagattttccttcgtgagctcatcagcaatgcctccgacgtcagtttttcttattcttcattttctatttcttttggtcgca |
45063174 |
T |
|
| Q |
220 |
ttacattactttagaaagatttattctgannnnnnnncattacaggctttggataaaattcgatttgaaagcttaacggacaagagcaagctcgatgctc |
319 |
Q |
| |
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|||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45063173 |
ttacattactttagaataattgattctgaatttttttcattacaggctttggataaaattcgatttgaaagcttaacggacaagagcaagctcgatgctc |
45063074 |
T |
|
| Q |
320 |
agccagagcttttcatcagacttgttcctgataaggctaacaaaacactatcaatcattgatagtggcattggcatgactaaagcaggtaaattaattaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45063073 |
agccagagcttttcatcagacttgttcctgataaggctaacaaaacactatcaatcattgatagtggcattggcatgactaaagcaggtaaattaattaa |
45062974 |
T |
|
| Q |
420 |
aacacctttttcatacattaatctgaaacactaacacttctgatcgaagatgtgtcaatgtcagtgttgtgtgcttgttaattcatatttaatgggtgtg |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45062973 |
aacacctttttcatacattaatctgaaacactaacacttctgatcaaagatgtgtcaatgtcagtgtcgtgtgcttgttaattcatatttaatgggtgtg |
45062874 |
T |
|
| Q |
520 |
ttgttgattgtttcagatttggtcaacaatttgggtacaattgcgaggtctggtacaaaggaattcatggaggcattgcaagctggggctgatgttagca |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45062873 |
ttgttgattgtttcagatttggtcaacaatttgggtacaattgcgaggtctggtacaaaggaattcatggaggcattgcaagctggggctgatgttagca |
45062774 |
T |
|
| Q |
620 |
tgattggtcaatttggtgttggtttttactctgcttatcttgttgcggagaaagttattgttacaactaagcacaatgatgatg |
703 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45062773 |
tgattggtcaatttggtgttggtttttactctgcttatcttgttgcggagaaagttattgttactactaagcacaatgatgatg |
45062690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 527 - 703
Target Start/End: Original strand, 18620115 - 18620291
Alignment:
| Q |
527 |
ttgtttcagatttggtcaacaatttgggtacaattgcgaggtctggtacaaaggaattcatggaggcattgcaagctggggctgatgttagcatgattgg |
626 |
Q |
| |
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|||||| ||||||||| ||||| |||||||| |||||||||||||| |||||||| |||||||||||||| || ||||| |||||||| ||||||||||| |
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| T |
18620115 |
ttgttttagatttggtgaacaacttgggtactattgcgaggtctggaacaaaggagttcatggaggcattacaggctggtgctgatgtgagcatgattgg |
18620214 |
T |
|
| Q |
627 |
tcaatttggtgttggtttttactctgcttatcttgttgcggagaaagttattgttacaactaagcacaatgatgatg |
703 |
Q |
| |
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||| |||||||| || || |||||||||||||| ||||| |||||||||||||| || || |||||||||||||||| |
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| T |
18620215 |
tcagtttggtgtaggattctactctgcttatctggttgctgagaaagttattgtaaccaccaagcacaatgatgatg |
18620291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 263 - 410
Target Start/End: Original strand, 18619595 - 18619742
Alignment:
| Q |
263 |
aggctttggataaaattcgatttgaaagcttaacggacaagagcaagctcgatgctcagccagagcttttcatcagacttgttcctgataaggctaacaa |
362 |
Q |
| |
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|||||||||| |||||||| |||||||| || || || ||||||||||| |||| || |||||||||||||| || ||||||||||| || || ||||| |
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| T |
18619595 |
aggctttggacaaaattcggtttgaaagtttgactgataagagcaagcttgatgggcaaccagagcttttcattaggcttgttcctgacaaagccaacaa |
18619694 |
T |
|
| Q |
363 |
aacactatcaatcattgatagtggcattggcatgactaaagcaggtaa |
410 |
Q |
| |
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|| || || |||||||| ||||||||||||||||| ||||||||||| |
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| T |
18619695 |
tactctttccatcattgacagtggcattggcatgaccaaagcaggtaa |
18619742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 18619298 - 18619395
Alignment:
| Q |
66 |
gaaacctttgcattccaggctgagatcaaccaacttctcagtctcatcatcaacactttttacagtaacaaagagattttccttcgtgagctcatcag |
163 |
Q |
| |
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||||| || |||||||| |||||||| ||||||||||| || | ||||||||||| || || |||||||| ||||||||| | ||||| |||||||| |
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| T |
18619298 |
gaaacattcgcattccaagctgagattaaccaacttcttagcttgatcatcaacacgttctatagtaacaaggagattttcttgcgtgaactcatcag |
18619395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 527 - 703
Target Start/End: Complemental strand, 42166666 - 42166490
Alignment:
| Q |
527 |
ttgtttcagatttggtcaacaatttgggtacaattgcgaggtctggtacaaaggaattcatggaggc-attgcaagctggggctgatgttagcatgattg |
625 |
Q |
| |
|
||||| |||||||||| ||||| | ||||| ||||| ||||||||||| |||||||||||||| || || || ||||| |||||||| |||||||||| |
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| T |
42166666 |
ttgttccagatttggtgaacaacctaggtaccattgctaggtctggtaccaaggaattcatggaagccatagct-gctggtgctgatgtgagcatgattg |
42166568 |
T |
|
| Q |
626 |
gtcaatttggtgttggtttttactctgcttatcttgttgcggagaaagttattgttacaactaagcacaatgatgatg |
703 |
Q |
| |
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| || |||||||||||||| |||||||| || |||||||| ||||| ||||||||||| || |||||||| ||||||| |
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| T |
42166567 |
gacagtttggtgttggtttctactctgcctaccttgttgccgagaaggttattgttaccacaaagcacaacgatgatg |
42166490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 527 - 703
Target Start/End: Complemental strand, 42177307 - 42177131
Alignment:
| Q |
527 |
ttgtttcagatttggtcaacaatttgggtacaattgcgaggtctggtacaaaggaattcatggaggc-attgcaagctggggctgatgttagcatgattg |
625 |
Q |
| |
|
||||| |||||||||| ||||| | ||||| ||||| ||||||||||| |||||||||||||| || || || ||||| |||||||| |||||||||| |
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|
| T |
42177307 |
ttgttccagatttggtgaacaacctaggtaccattgctaggtctggtaccaaggaattcatggaagccatagct-gctggtgctgatgtgagcatgattg |
42177209 |
T |
|
| Q |
626 |
gtcaatttggtgttggtttttactctgcttatcttgttgcggagaaagttattgttacaactaagcacaatgatgatg |
703 |
Q |
| |
|
| || |||||||||||||| |||||||| || |||||||| ||||| ||||||||||| || |||||||| ||||||| |
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|
| T |
42177208 |
gacagtttggtgttggtttctactctgcctaccttgttgccgagaaggttattgttaccacaaagcacaacgatgatg |
42177131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 42178458 - 42178355
Alignment:
| Q |
72 |
tttgcattccaggctgagatcaaccaacttctcagtctcatcatcaacactttttacagtaacaaagagattttccttcgtgagctcatcagcaatgcct |
171 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||| |||||||| ||||| | |
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|
| T |
42178458 |
tttgctttccaggctgagatcaatcaacttctcagtctaatcatcaacaccttttacagtaacaaggagatttttcttcgtgaactcatcagtaatgctt |
42178359 |
T |
|
| Q |
172 |
ccga |
175 |
Q |
| |
|
|||| |
|
|
| T |
42178358 |
ccga |
42178355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 42167784 - 42167687
Alignment:
| Q |
78 |
ttccaggctgagatcaaccaacttctcagtctcatcatcaacactttttacagtaacaaagagattttccttcgtgagctcatcagcaatgcctccga |
175 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| || ||||| |
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|
| T |
42167784 |
ttccaggctgagatcaatcaacttcttagtctcatcatcaatactttttacagcaacaaggagatttttcttcgtgaactcatcagcaacgcttccga |
42167687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 416
Target Start/End: Complemental strand, 42166920 - 42166767
Alignment:
| Q |
263 |
aggctttggataaaattcgatttgaaagcttaacggacaagagcaagctcgatgctcagccagagcttttca-tcagacttgttcctgataaggctaaca |
361 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| || |||||||||||||| ||| ||||||||||| | |||| ||| | || ||||||| ||| | |||| |
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|
| T |
42166920 |
aggctttggataagattcggtttgagggcttgaccgacaagagcaagcttgattctcagccagagttgttcattcaca-ttattcctgacaagaccaaca |
42166822 |
T |
|
| Q |
362 |
aaacactatcaatcattgatagtggcattggcatgactaaagcaggtaaattaat |
416 |
Q |
| |
|
| || | | |||||||||||||| ||||| ||||| ||||| ||||| ||||| |
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|
| T |
42166821 |
acactttgactatcattgatagtgggattggaatgaccaaagctggtaagttaat |
42166767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 665
Target Start/End: Original strand, 207813 - 207858
Alignment:
| Q |
620 |
tgattggtcaatttggtgttggtttttactctgcttatcttgttgc |
665 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | ||||||||| |
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|
| T |
207813 |
tgattggtcaatttggtgttggattctactctgcatttcttgttgc |
207858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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