View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_41 (Length: 248)
Name: NF18411_low_41
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_41 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 41452950 - 41453182
Alignment:
| Q |
19 |
tgccagagtcggaagtgatggagcagctgtggacacagcgggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaag |
118 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41452950 |
tgccagagccggacgtgatggagcagctgtggacacagcgggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaag |
41453049 |
T |
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| Q |
119 |
caatttgacattgtcactaacacttcagaccattattttagtaaaaataattcctccatgaagcaggttag---nnnnnnnnnncttttctcaaaatgtc |
215 |
Q |
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| T |
41453050 |
taatttgacattgtcactgacacttcagaccattattttagtaaaaataattcctccatgaagcaggttagtttttttttttttcttttctaaaaatgtc |
41453149 |
T |
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| Q |
216 |
tcttacagacgtacttttgtcagttctgatctt |
248 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
41453150 |
tcttacagacgtacttttttcagttctgatctt |
41453182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 41431165 - 41431297
Alignment:
| Q |
57 |
cgggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattt |
156 |
Q |
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||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |||| | ||| ||| |||||||| || |
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| T |
41431165 |
cgggtttgacaatcactgatgaacctgaaaatgaaactctgaagaaacttcgaagctttaagcaatttgacgctgtcgcggacagttcggaccattactt |
41431264 |
T |
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| Q |
157 |
tagtaaaaataattcctccatgaagcaggttag |
189 |
Q |
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| T |
41431265 |
tattaaaaatcattcctccatgaagcaggttag |
41431297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 41425755 - 41425873
Alignment:
| Q |
60 |
gtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttag |
159 |
Q |
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| T |
41425755 |
gtttgacaatcactgatgaacccgaaaatgaaactctgagaaaacttggaagttttaagcaatttgacactatcagtgacacttcagaccattactttat |
41425854 |
T |
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| Q |
160 |
taaaaataattcctccatg |
178 |
Q |
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||||| | ||||||||||| |
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| T |
41425855 |
taaaagtcattcctccatg |
41425873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 41441817 - 41441934
Alignment:
| Q |
61 |
tttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttagt |
160 |
Q |
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||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||||| ||| |||||||||| | |||| | |
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| T |
41441817 |
tttgacaatcactgatgaacccgaaaatgaaactctgaggaaacttcaaagttttaagcaatttgacactgtcaccgacatttcagaccataactttatt |
41441916 |
T |
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| Q |
161 |
aaaaataattcctccatg |
178 |
Q |
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|||||| ||||| |||| |
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| T |
41441917 |
gaaaatatttccttcatg |
41441934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 33369411 - 33369541
Alignment:
| Q |
59 |
ggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattatttta |
158 |
Q |
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||||||| ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| |||| |
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| T |
33369411 |
ggtttgacaatcactgatgaacccgaaaatgaaactcttaggaaacttcgaagttttaagcaatttgacactgtcactgacacctcagaccattacttta |
33369510 |
T |
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| Q |
159 |
gtaaaaataattcctccatgaagcaggttag |
189 |
Q |
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| T |
33369511 |
ataaaagtaattcctccatgaagcaggttag |
33369541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 33362952 - 33363122
Alignment:
| Q |
19 |
tgccagagtcggaagtgatggagcagctgtggacacagcgggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaag |
118 |
Q |
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|||||||| ||| |||||||||||||||||| | ||||||| | | ||||| ||||||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
33362952 |
tgccagagctggatgtgatggagcagctgtggttccctcgggttttacagtcactcatgaacccgaaaatgaaaccctgaggaaacttcgaagttttaag |
33363051 |
T |
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| Q |
119 |
caatttgacattgtcactaacacttcagaccattattttagtaaaaataattcctccatgaagcaggttag |
189 |
Q |
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| T |
33363052 |
caatttgacactgttactgacacttcagaccattactttattaaaaataattgctccgtgaagcaggttag |
33363122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 5244 - 5373
Alignment:
| Q |
60 |
gtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttag |
159 |
Q |
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|||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| | ||| | ||||||| |||||||| |||| |
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| T |
5244 |
gtttgacaatcactgatgaacccgaaaatgaaactctgagaaaacttggaagttttaagcaatttgacactatcagtgacacttcggaccattactttat |
5343 |
T |
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| Q |
160 |
taaaaataattcctccatgaagcaggttag |
189 |
Q |
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||||| | ||||||||||| ||||||||| |
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| T |
5344 |
taaaagtcattcctccatggcgcaggttag |
5373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 18214 - 18085
Alignment:
| Q |
60 |
gtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttag |
159 |
Q |
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|||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| | ||| | ||||||| |||||||| |||| |
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| T |
18214 |
gtttgacaatcactgatgaacccgaaaatgaaactctgagaaaacttggaagttttaagcaatttgacactatcagtgacacttcggaccattactttat |
18115 |
T |
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| Q |
160 |
taaaaataattcctccatgaagcaggttag |
189 |
Q |
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||||| | ||||||||||| ||||||||| |
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| T |
18114 |
taaaagtcattcctccatggcgcaggttag |
18085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 13758 - 13707
Alignment:
| Q |
57 |
cgggtttgagaatcactgatgaacccgaaaacgaaactctgaagaaacttcg |
108 |
Q |
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||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
13758 |
cgggtttgacaatcactgatgaacctgaaaatgaaactctgaagaaacttcg |
13707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 7763635 - 7763517
Alignment:
| Q |
71 |
actgatgaacccgaaaacgaaactctgaagaaacttcgaagttttaagcaatttgacattgtcactaacacttcagaccattattttagtaaaaataatt |
170 |
Q |
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|||||| |||| |||| |||||||||| |||||||| |||||||||||||||||||| ||||| | ||| |||||||||| | | || |||||| |||| |
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| T |
7763635 |
actgataaaccagaaagtgaaactctgaggaaacttcaaagttttaagcaatttgacactgtcattgacatttcagaccatcactatattaaaaaaaatt |
7763536 |
T |
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| Q |
171 |
cctccatgaagcaggttag |
189 |
Q |
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| ||||||||||| ||||| |
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| T |
7763535 |
cttccatgaagcatgttag |
7763517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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