View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18411_low_42 (Length: 244)
Name: NF18411_low_42
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_42 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 26)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10034855 - 10034614
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
10034855 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaatactcaagttggaaagtgctgtcaaatattggaga |
10034756 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10034755 |
ccccattccgttacagatggctttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
10034656 |
T |
|
| Q |
201 |
attttagattcaacctttcaagagctgtgatgatgtccatct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10034655 |
attttagattcaacctttcaagagctgtgagcatgtccatct |
10034614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 9841710 - 9841469
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||||| |||||||||||| || |
|
|
| T |
9841710 |
cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttatcaattcgcaagtaggaaagtgccgtcaaatattggtga |
9841611 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
200 |
Q |
| |
|
||||||||||| || | ||| |||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9841610 |
ccccattccgtaaccggcggtgctgttttttgggtagaaatagcaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
9841511 |
T |
|
| Q |
201 |
attttagattcaacctttcaagagctgtgatgatgtccatct |
242 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
9841510 |
attttagattcaacatttcaagagctgtgagcatgtccatct |
9841469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 10263550 - 10263324
Alignment:
| Q |
4 |
aagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggagaccc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10263550 |
aagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcacccttttgaatagtcaagtaggaaagtgctgtcaaatattggagaccc |
10263451 |
T |
|
| Q |
104 |
cattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcacatt |
203 |
Q |
| |
|
|||||||| || | ||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10263450 |
cattccgtaaccggcggtgttgttttttgggtagaaatctcaattgattgtaatttgggaggtagacaaactccttcagaaaatgacaactctgcacatg |
10263351 |
T |
|
| Q |
204 |
ttagattcaacctttcaagagctgtga |
230 |
Q |
| |
|
||||| ||||||||||||||| |||| |
|
|
| T |
10263350 |
ttagaaacaacctttcaagagcggtga |
10263324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10520337 - 10520096
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
10520337 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaatacccaagtcggaaagtgctgtcaaatattggaga |
10520238 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
200 |
Q |
| |
|
||||||||||| || | ||| |||| |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10520237 |
ccccattccgtaaccggcggtgctgttttttgggtagaaatcttaattgattgcaatttgggaggtagacaaactccttcacaaaatgacaactctacac |
10520138 |
T |
|
| Q |
201 |
attttagattcaacctttcaagagctgtgatgatgtccatct |
242 |
Q |
| |
|
| | |||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
10520137 |
aatctagagtcaacctttcaagagctgtgagcatgtccatct |
10520096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10666318 - 10666077
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
10666318 |
cacaagggatatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttcaatactcaagtaggaaagtgctgtcaaatattggaga |
10666219 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
200 |
Q |
| |
|
||||||||||| || | || || ||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10666218 |
ccccattccgtaaccggcggagttattctttgagatgaaatcacaattgtttgtaatttgggaggtagacaaactccttcacaaaatgacaactgtgcac |
10666119 |
T |
|
| Q |
201 |
attttagattcaacctttcaagagctgtgatgatgtccatct |
242 |
Q |
| |
|
|| ||||| ||||| |||||||||| |||| |||||||||| |
|
|
| T |
10666118 |
atcttagaatcaacttttcaagagcagtgagcatgtccatct |
10666077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 10129774 - 10129545
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||| ||| ||| |
|
|
| T |
10129774 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcaccctttccaatactcaatcttgaaagagcggtcaaatcttgaaga |
10129675 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
200 |
Q |
| |
|
|||||||| || |||| ||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10129674 |
ccccattctgtcacaggcggtgctgttcttttggactgtatctcaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
10129575 |
T |
|
| Q |
201 |
attttagattcaacctttcaagagctgtga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10129574 |
attttagattcaacctttcaagagctgtga |
10129545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10431258 - 10431499
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10431258 |
cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttgaattgtcaataaggaaagtgctgtcaaatattggaga |
10431357 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
200 |
Q |
| |
|
||||||||||| || | || || ||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || | || |
|
|
| T |
10431358 |
ccccattccgtaaccggcggagttattcttcgagatgaaaaccaaattgattgtaatttgggaggtagacaaactccttcacaaaatgacagcttttgac |
10431457 |
T |
|
| Q |
201 |
attttagattcaacctttcaagagctgtgatgatgtccatct |
242 |
Q |
| |
|
|||| | || |||| |||||||||| |||| |||||||||| |
|
|
| T |
10431458 |
atttcatatgcaacttttcaagagcggtgagcatgtccatct |
10431499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 10361018 - 10361242
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| |
|
|
| T |
10361018 |
cacaagggagacgggtagcaatgactccttcatcaaggtgttaactatatcatcaccctttccaatacccaagttggaaagtgctgtcaaatattggaga |
10361117 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
200 |
Q |
| |
|
|||||||| || |||| || |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
10361118 |
ccccattctgtcacaggcagtgctgttcttttggactgtatcataattgattgtaatttgggaggtagacaaactccttcacaaaacgacaactctggcc |
10361217 |
T |
|
| Q |
201 |
attttagattcaacctttcaagagc |
225 |
Q |
| |
|
| | |||| |||||| ||||||||| |
|
|
| T |
10361218 |
aatctagagtcaaccgttcaagagc |
10361242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 9980318 - 9980125
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
9980318 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaattctcaagtcgaaaagtgctgtcaaatattggaga |
9980219 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaact |
194 |
Q |
| |
|
||||||||||| || | ||| |||| ||| || |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
9980218 |
ccccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgattgtaatttgagaggtagacaaactccttcagaaaatgacaact |
9980125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 9852591 - 9852398
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| | ||||| |||||||||||||||||| |
|
|
| T |
9852591 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaatccacaatgatgaaagagctgtcaaatattggaga |
9852492 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaact |
194 |
Q |
| |
|
||||||||||| || | ||| |||| ||| || |||||| ||||| | |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9852491 |
ccccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgttcttaatttgggaggtagacaaactccttcagaaaatgacaact |
9852398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10373059 - 10373300
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| |||| || || ||||| | || ||||||| |
|
|
| T |
10373059 |
cacaagggagatgggtagcaacgactccttcatcaaggtgttaactatatcatcatcctttctaatactcaagcttgacagagctgttagatcttggaga |
10373158 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcac |
200 |
Q |
| |
|
||||||||||| || | ||| || ||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10373159 |
ccccattccgtaaccggcggtgttattcttcgagatgaaatccaaattgattgtaatttgagaggtagacaaactccttcacaaaatgacaactctcgac |
10373258 |
T |
|
| Q |
201 |
attttagattcaacctttcaagagctgtgatgatgtccatct |
242 |
Q |
| |
|
|| | | |||||||||||||||| |||| |||||||||| |
|
|
| T |
10373259 |
atcccaaactcaacctttcaagagcggtgagcatgtccatct |
10373300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 10583365 - 10583172
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||| || | ||||| ||||| | || || |||| |
|
|
| T |
10583365 |
cacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcatcctttccaatactccagcttgaaagagctgttagatctttgaga |
10583266 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaact |
194 |
Q |
| |
|
||||||||||| || | ||| |||| |||||| ||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
10583265 |
ccccattccgtaaccggcggtgctgttttttgggtaaaaatcacaattgatcgtaatttgagaggtagacaaactccttcagaaaatgacaact |
10583172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 10503432 - 10503240
Alignment:
| Q |
3 |
caagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggagacc |
102 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| | ||||| ||| | ||||| || |||| || || ||||| |
|
|
| T |
10503432 |
caagggagatgggaagcaacgactccttcatcaaggtgttaaatatatcatcacctgctccaattttcagtcttgaaagagcggtcagatcttcaagacc |
10503333 |
T |
|
| Q |
103 |
ccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactc |
195 |
Q |
| |
|
||||| | ||| || | | ||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
10503332 |
ccatttcattataggagttgttgttctttgggaccaaatatcaattgattgtaatttgggaggaagacaaactccttcacaaaatgataactc |
10503240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 10091649 - 10091457
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| |||| |||||||||||||| | ||| || ||| ||||| |||||| | || | || ||||||| |
|
|
| T |
10091649 |
cacaagggagatgggtagcaacgactccgtcaccaagttgttaactatatcacctgcctctttaatcatcaattcggaaagagtggttagatcttggaga |
10091550 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaac |
193 |
Q |
| |
|
||||||||||| || | ||| || || ||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10091549 |
ccccattccgtaaccggcggtgttatttttttggaaaaaataacaatcttttgtaatttgggaggtagacaaactccttcacaaaatgacaac |
10091457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 10198531 - 10198339
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| |||| |||||||||||||| | ||| || ||| ||||| |||||| | || | || ||||||| |
|
|
| T |
10198531 |
cacaagggagatgggtagcaacgactccgtcaccaagttgttaactatatcacctgcctctttaatcatcaattcggaaagagtggttagatcttggaga |
10198432 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaac |
193 |
Q |
| |
|
||||||||||| || | ||| || || ||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10198431 |
ccccattccgtaaccggcggtgttatttttttggaaaaaataacaatcttttgtaatttgggaggtagacaaactccttcacaaaatgacaac |
10198339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 10531420 - 10531319
Alignment:
| Q |
94 |
ttggagaccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaac |
193 |
Q |
| |
|
||||||||||||||| ||||||| || ||| ||||||| | || ||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
10531420 |
ttggagaccccattctgttacaggcggcgttgctctttggaaagatatcacaattgattgtaatttgggaggtagacaaattccttcacaaaataacaac |
10531321 |
T |
|
| Q |
194 |
tc |
195 |
Q |
| |
|
|| |
|
|
| T |
10531320 |
tc |
10531319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 11771993 - 11771898
Alignment:
| Q |
94 |
ttggagaccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatga |
189 |
Q |
| |
|
||||||||||||||| || || | |||| ||||| ||||||| || || |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11771993 |
ttggagaccccattctgtaactggtggtgttgttatttgggaaaaactcacaattgattgtaagttgggaggtagacaaactccttcacaaaatga |
11771898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 11779292 - 11779387
Alignment:
| Q |
94 |
ttggagaccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatga |
189 |
Q |
| |
|
||||||||||||||| || || | |||| ||||| ||||||| || || |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11779292 |
ttggagaccccattctgtaactggtggtgttgttatttgggaaaaactcacaattgattgtaatttgggaggtagacaaactctttcacaaaatga |
11779387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 13852822 - 13852873
Alignment:
| Q |
145 |
aattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactct |
196 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13852822 |
aattgattgtaatttaggaggtagacaaactccttcacaaaatgacaactct |
13852873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10531633 - 10531561
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaat |
73 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| || ||||||||||||||||||| || || ||| ||||||| |
|
|
| T |
10531633 |
cacaagggagatgggaagcaatgactcgttcagcacggtgttaactatatcatcaaccgttccaactgtcaat |
10531561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 10680167 - 10680127
Alignment:
| Q |
145 |
aattgattgtaatttgggaggtagacaaactccttcacaaa |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10680167 |
aattgattgtaatttgggaggtagacaaactccttcacaaa |
10680127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10680431 - 10680359
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaat |
73 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| || ||||||||||||||||||| || || ||| ||||||| |
|
|
| T |
10680431 |
cacaagggagatgggaagcaatgactcgttcagcacggtgttaactatatcatcaaccgttccaactgtcaat |
10680359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10192948 - 10192882
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaatt |
67 |
Q |
| |
|
||||||||||||||||||||| | ||| || | ||||||||||||||||||| || ||||||||||| |
|
|
| T |
10192948 |
cacaagggagatgggtagcaacggctcttttaccaaggtgttaactatatcaccatccttttcaatt |
10192882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10086028 - 10085962
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaatt |
67 |
Q |
| |
|
|||||||||||||| |||||| | ||| || | ||||||||||||||||||| || ||||||||||| |
|
|
| T |
10086028 |
cacaagggagatggttagcaacggctcttttaccaaggtgttaactatatcaccatccttttcaatt |
10085962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 10085944 - 10085907
Alignment:
| Q |
164 |
ggtagacaaactccttcacaaaatgacaactctgcaca |
201 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
10085944 |
ggtaggcaaactccttcacaaaatgacaactctccaca |
10085907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 10192864 - 10192827
Alignment:
| Q |
164 |
ggtagacaaactccttcacaaaatgacaactctgcaca |
201 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
10192864 |
ggtaggcaaactccttcacaaaatgacaactctccaca |
10192827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 54819 - 55012
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||| || |||| |||||||||||||||||| |
|
|
| T |
54819 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaatacacaaaaaaaaaagagctgtcaaatattggaga |
54918 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaact |
194 |
Q |
| |
|
||||||||||| || | ||| |||| ||| || |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
54919 |
ccccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgattgtaatttgagaggtagacaaactccttcagaaaatgacaact |
55012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 11487881 - 11487685
Alignment:
| Q |
1 |
cacaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggaga |
100 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| | |||| ||||| ||||| || |||| || || |||| |
|
|
| T |
11487881 |
cacaagggagatgggtagcaacgactgcttcatcaaggtgttaagtatatcatcacccactccaatagtcaaccgtgaaagagcggtcagatctttgaga |
11487782 |
T |
|
| Q |
101 |
ccccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctg |
197 |
Q |
| |
|
||||||||||| |||| || ||| ||||| || ||||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
11487781 |
ccccattccgtaacaggcggcgttgatctttccgacaaaatctcaattgattctaatttgggaggtagagaaacatcttcacaaaatgacaactctg |
11487685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 44955024 - 44955066
Alignment:
| Q |
149 |
gattgtaatttgggaggtagacaaactccttcacaaaatgaca |
191 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
44955024 |
gattgtaatttgggaggtaggcaaacaccttcacaaaatgaca |
44955066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 26909739 - 26909545
Alignment:
| Q |
2 |
acaagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggagac |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| | |||||| ||||| || || |||||| ||||| | || | || |||||||| |
|
|
| T |
26909739 |
acaagggagatgggtagcaacaactccttcatcaaggtgttaaatgtatcatgaccctctttgatagtcaattctgaaagagtggttagatcttggagac |
26909640 |
T |
|
| Q |
102 |
cccattccgttacagatggttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactct |
196 |
Q |
| |
|
||||||||| ||||| ||| ||||| |||| || ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26909639 |
accattccgtaacagacggtgttgttatttgagaccaaaggtcaattgattgtaagttgggaggtagacaaacaccttcacaaaatgacaactct |
26909545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 17850156 - 17850338
Alignment:
| Q |
17 |
agcaatgactccttcatcaaggtgttaactatatcatcacccttttcaattgtcaataaggaaagtgctgtcaaatattggagaccccattccgttacag |
116 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| ||||| ||| ||||| | ||||| || || | ||||||||||||||| ||||||| |
|
|
| T |
17850156 |
agcaacgactccttcatcaaggtgttcactatatcatcatcctttccaagactcaatgatgaaagagcagttaggccttggagaccccattctgttacag |
17850255 |
T |
|
| Q |
117 |
atgg---ttttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactct |
196 |
Q |
| |
|
|| | |||||||| |||| ||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
17850256 |
gcggggctgttgttcttcgggaatgaatatcaattgattgtaacttgggaggtagggaaactcctccacaaaatgacaactct |
17850338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University