View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_50 (Length: 211)
Name: NF18411_low_50
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 1701925 - 1701740
Alignment:
| Q |
14 |
aagaatattgagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttc |
113 |
Q |
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| T |
1701925 |
aagaatatcgagtaaaatgatcaacaaacacaagataatatttgtaaccatgaactgaagtgataggagagggtccccaaacatcagaaaataacagttc |
1701826 |
T |
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| Q |
114 |
aagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatgaatttttt |
199 |
Q |
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| T |
1701825 |
aagaggagctgtggttttgatagaagaaacagaaaaaggaagcttatgacttttattaatatggcaagaattacaatgaaattttt |
1701740 |
T |
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Target: chr8 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 181434 - 181313
Alignment:
| Q |
78 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
177 |
Q |
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| T |
181434 |
aggagaaggtccccaaacatcagaaaataacagttcaagaggagctgcggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatga |
181335 |
T |
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| Q |
178 |
caagaattacaatgaatttttt |
199 |
Q |
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| T |
181334 |
caagaattacaatgaaattttt |
181313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 5400652 - 5400484
Alignment:
| Q |
23 |
gagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagc |
122 |
Q |
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| T |
5400652 |
gagtgaaatggtcaacaaagacaagataatacctgtaaccattaatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggaga |
5400553 |
T |
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| Q |
123 |
tacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
191 |
Q |
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| T |
5400552 |
gaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
5400484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 3541627 - 3541459
Alignment:
| Q |
23 |
gagtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagaggagc |
122 |
Q |
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|||| ||||| |||||||| ||||||||||| ||||||||||| | || || ||||| || ||||||||||||||||| || | ||||||| |||| |
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| T |
3541627 |
gagtgaaatggtcaacaaagacaagataatacttgtaaccattgatggacgttataggggatggtccccaaacatcagagaaaatgagttcaaatggaga |
3541528 |
T |
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| Q |
123 |
tacggttttgatagaagaaactgaaaaaggaagcttatgacttttattaatatgacaagaattacaatg |
191 |
Q |
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| T |
3541527 |
gaaagtttgtattgaagatatagaaaaaggaagtttatgacttttattaatagagcaggaattacaatg |
3541459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 31098901 - 31098805
Alignment:
| Q |
24 |
agtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcagaaaataacagttcaagagga |
120 |
Q |
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||||||||||||||| |||||||||||||||||||| ||| | | | | || ||||| |||| ||||||||||||||| | |||||||||||| |
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| T |
31098901 |
agtaaaatgatcaacgaacacaagataatatttgtatccactgatagtgttaattggagagggtctccaaacatcagaaaaaatgagttcaagagga |
31098805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 26592523 - 26592600
Alignment:
| Q |
24 |
agtaaaatgatcaacaaacacaagataatatttgtaaccattaactgaagtgataggagaaggtccccaaacatcaga |
101 |
Q |
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|||||| || ||||||||||||||||| ||| | |||||||||| || || ||||| || ||||||||||||||||| |
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| T |
26592523 |
agtaaagtggtcaacaaacacaagatagtatctataaccattaatggatgttataggggatggtccccaaacatcaga |
26592600 |
T |
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