View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18411_low_9 (Length: 477)
Name: NF18411_low_9
Description: NF18411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18411_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 36859423 - 36858954
Alignment:
| Q |
11 |
caaaggaaattagaattttgaagggacttggggttgcttcttcatgtgtggtgtgggaaatggattcactgtggtcaactagtgagtgcaggtgaatcca |
110 |
Q |
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| T |
36859423 |
caaaggaaattagaattttgaagggacttggagttgcttcttcatgtgtggtgtgggaaatggattcactgtggtcaactagtgagtgcaggtgaatcca |
36859324 |
T |
|
| Q |
111 |
gctgttttttatcagtaatttttaatagatttgttagtgttaaa-----acc----------gcaatggattgattgagtgactgcaggaatccgactcc |
195 |
Q |
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| T |
36859323 |
gctgttttttatcagtaatttttaatagatttgttagtgttaaatctgcaccctccgatcttgcaatgcattgattgagtgactgcaggaatccgactcc |
36859224 |
T |
|
| Q |
196 |
ggtggtgtgtgcatgtgaagtgcatttgtgttttacttagaaattaggaatggggttctgttgctgattacagagggtataattgctgtttgtatttgtg |
295 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36859223 |
ggtggtgtgtgcgtgtgaagtgcatttgtgttttacttagaaattaggaatggggttctgttgctgattacagagggtataattgctgtttgtatttgtg |
36859124 |
T |
|
| Q |
296 |
gtgataaaatggtttaggatgtatcatgttctgaatgtcaaaagcatggtgctagaatcttttaagtggtttatcttttttgtgaaaattagagtagcta |
395 |
Q |
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| T |
36859123 |
gtgataaaatggtttaggatgtatcgtgttctgaatgtcaaaagcatggtgctagaatcttttaagtggtttatcttttttgtgaaaattagagtagtta |
36859024 |
T |
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| Q |
396 |
cagttgttccaattggtaaggttacggctcatatttcacgaggatgtgagtttaaattttgatgttgatg |
465 |
Q |
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| T |
36859023 |
cagttggtccaattggtaaggttacggctcatatttcacgaggatgtgagtttaaattttgatgttgatg |
36858954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 36858757 - 36858674
Alignment:
| Q |
213 |
aagtgcatttgtgttttacttagaaattaggaatggggttctgttgctgattacagagggtataattgctgtttgtatttgtggt |
297 |
Q |
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| T |
36858757 |
aagtgcatttgtgctt-acttagaaattaggaattgggttccgttgctgattatggagagtataattgctgtttgtgtttgtggt |
36858674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 36858813 - 36858771
Alignment:
| Q |
19 |
attagaattttgaagggacttggggttgcttcttcatgtgtgg |
61 |
Q |
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| T |
36858813 |
attagaattttgaagggacttcgagttgcttcttaatgtgtgg |
36858771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 3555984 - 3556028
Alignment:
| Q |
19 |
attagaattttgaagggacttggggttgcttcttcatgtgtggtg |
63 |
Q |
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| T |
3555984 |
attagaattttgaaggtacttggagttgtttcttaatgtgtggtg |
3556028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 16606568 - 16606641
Alignment:
| Q |
19 |
attagaattttgaagggacttggggttgcttcttcatgtgtggt---gtgggaaatggattcactgtggtcaac |
89 |
Q |
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| T |
16606568 |
attagaattttgaaggtacttggagttgcttcttaatgtgtggtggcgtgggaaatggattccctgtgttcaac |
16606641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 33155205 - 33155161
Alignment:
| Q |
19 |
attagaattttgaagggacttggggttgcttcttcatgtgtggtg |
63 |
Q |
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| T |
33155205 |
attagaattttgaaggtacttggagttgcttcttaatgtgtggtg |
33155161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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