View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18412_high_13 (Length: 494)
Name: NF18412_high_13
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 46184497 - 46184038
Alignment:
| Q |
18 |
accccgcctatggatccggctactgccatgcaatgttgtcatccgagctgctgcaggcacaatgctgacaggaacagcctcaaattaggagccgatgtgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46184497 |
accccgcctatggatccggctactgccatgtaatgttgtcatcccagctgctgcaggcacaatgctgacaggaacagcctcaaattaggagttgatgtgc |
46184398 |
T |
|
| Q |
118 |
tttcttctgctgtcaaaattctgctcta-gctcaattgtcattcccagttactattcaaccaattctctgcattctttgccactttaatttgtttatcat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46184397 |
tttcttctgctgtcaaaattctgctctaagctcaattgtcattcccagttactattcaaccaattctctgcattctttgccactttaatttgtttatcat |
46184298 |
T |
|
| Q |
217 |
ttgacagatgcagtatgcagtacagttgcacatataatctcaaattcctccacttttcagccacaactaatcaaatttttcaattacaatctcctcggaa |
316 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46184297 |
ttgacagatgcagta-------catttgcacatataatctcaaattcgtccacttttcggccacaactaatcaaatttttcaattacaatctcctcggaa |
46184205 |
T |
|
| Q |
317 |
tttagatatttgcccaacacctctccatacctacgataggttgaattggatttattaattattgatactgatttcatttcttccatttctttgctatagt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46184204 |
tttagatatttgcccaacacctctccatacctacgataggttgaattggatttattaattaatgatactgatttcatttcttccatttctttgctatagt |
46184105 |
T |
|
| Q |
417 |
attattgtttatgcaaatctaagcttaattattaaacttatggtggacaggtaagtaatattatatt |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46184104 |
attattgtttatgcaaatctaagcttaattattaaatttatggtggacaggtaagtaatattatatt |
46184038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University