View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_high_17 (Length: 427)
Name: NF18412_high_17
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Complemental strand, 53044603 - 53044211
Alignment:
| Q |
18 |
gaagtgtgatgctggctatttgaagcatatgatagaatatagctcttgtgcatttaagtttctcattttgatgatcatctttagaatggggtagagtttt |
117 |
Q |
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| T |
53044603 |
gaagtgtgatgctggctatttgaagcatatgatagaatatagctcttgtgcatttaagtttctcattttgatgatcatctttagaatggggtagagtttt |
53044504 |
T |
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| Q |
118 |
gagaatatagtgattggaattctaaagattctcccactaagagaaatcaaaaatacataggggatataagaccactgaaaaattaaatataatactgata |
217 |
Q |
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| T |
53044503 |
gagaatatagtgattggaattctaaagattctcccactaagagaaatcaaa--tacataggggatataagaccactgaaaaattaaatataatactgata |
53044406 |
T |
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| Q |
218 |
aaaattgcatcatgagatatcagttgtgatgagttatttgatataaaatgtattcgagtacttgtaaatgtcccgtgcagtcaatgtagggttgaggttc |
317 |
Q |
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| T |
53044405 |
aaaattgcatcatgagatatcagttgcgatgagttatttgatataaaatgtattcgagtacttgtaaatgtcccgtgcagtcaatgtagggttgaggttc |
53044306 |
T |
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| Q |
318 |
ttcttttactggatcagctttcacgaggcccttgacatccaatccttgacgtttaagaagtgctggaaacaagacacaatattagaataagataa |
412 |
Q |
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| T |
53044305 |
ttcttttactggatcagctttcacgaggcccttgacatccaatccttgacgtttaagaagtgctggaaacaagacacaatattagaataagataa |
53044211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 273 - 381
Target Start/End: Original strand, 15962845 - 15962953
Alignment:
| Q |
273 |
gagtacttgtaaatgtcccgtgcagtcaatgtagggttgaggttcttcttttactggatcagctttcacgaggcccttgacatccaatccttgacgttta |
372 |
Q |
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|||||| ||||||||||| ||||| |||||||| |||||||||||||| ||||||| |||||||||| || |||||||||| | |||||||||||| |
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| T |
15962845 |
gagtacctgtaaatgtccagtgcaatcaatgtaaggttgaggttcttcctttactgcgtcagctttcaacagacccttgacatttactccttgacgtttc |
15962944 |
T |
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| Q |
373 |
agaagtgct |
381 |
Q |
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| T |
15962945 |
aggagtgct |
15962953 |
T |
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