View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18412_high_20 (Length: 385)

Name: NF18412_high_20
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18412_high_20
NF18412_high_20
[»] chr4 (3 HSPs)
chr4 (10-370)||(43242688-43243047)
chr4 (10-211)||(44890936-44891135)
chr4 (54-132)||(35076832-35076910)
[»] chr2 (3 HSPs)
chr2 (220-370)||(35780208-35780362)
chr2 (220-370)||(20439925-20440079)
chr2 (220-370)||(20445530-20445684)
[»] chr3 (1 HSPs)
chr3 (10-127)||(18009757-18009873)
[»] chr5 (2 HSPs)
chr5 (12-131)||(32234261-32234380)
chr5 (155-192)||(32234401-32234438)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 43242688 - 43243047
Alignment:
Q  10 tcatcatcttcaactcaaactcataaatatccaaaaaact-agaaaaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaa 108  Q
    ||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  43242688 tcatcatcttcaactcaaactcataaatacccaaaaaaattagaaaaacaaattcaacgatacatattctcatatcttcatctctttattccaaatcaaa 43242787  T
Q  109 caaagctcaacccacaattaattcatctatatcaatcnnnnnnnnnttatatacaaacttcaaaacaaaacacataaccaataatctgatgttgtttcaa 208  Q
    |||| ||||||||||||||||||| |||||||| |||         ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43242788 caaatctcaacccacaattaattcctctatatctatcaaaaaaaaattatatacaaacttcaaaacaaaacgcataaccaataatctgatgttgtttcaa 43242887  T
Q  209 ccannnnnnnnctccctcaaaaacaacaacagttttcaatctaacaacaccaaccacaagtatttttccataatcatgttctaacatcaccaacacaaac 308  Q
    |||        ||||||||| |||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43242888 ccatttttt--ctccctcaagaacagcaacaattttcaatctaataacaccaaccacaagtatttttccataatcatgttctaacatcaccaacacaaac 43242985  T
Q  309 tctgatacaaaccttcaagaacttaacaacaatcacacaattacaatttccatcaaccaaca 370  Q
    ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||    
T  43242986 tctgatacaaaccttcaagaactcaacaacaatcacacaatttcgatttccatcaaccaaca 43243047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 44890936 - 44891135
Alignment:
Q  10 tcatcatcttcaactcaaactcataaatatcc-aaaaaactagaaaaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaa 108  Q
    ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44890936 tcatcatcttcaactcaaactcataaaaaccccaaaaaactagaaaaacaaattcaacaatacatattctcaaatcttcatctctttattctaaatcaaa 44891035  T
Q  109 caaagctcaacccacaattaattcatctatatcaatcnnnnnnnnnttatatacaaacttcaaaacaaaacacataaccaataatctgatgttgtttcaa 208  Q
    |||| ||||||||||||||||||| |||||||| ||           |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  44891036 caaatctcaacccacaattaattcctctatatctat--aaaaaaaactatatataaacttcaaaacaaaac-cataaccaataatctgatgttgtttcaa 44891132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 35076832 - 35076910
Alignment:
Q  54 aaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaacaaagctcaacccacaattaattc 132  Q
    |||||| |||||||| ||||  |||||||| || |||||| |||||||||  ||||||| |||||||||||||||||||    
T  35076832 aaacaatttcaacaacacatgctctcaaatattgatctctatattccaaaataaacaaatctcaacccacaattaattc 35076910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 220 - 370
Target Start/End: Original strand, 35780208 - 35780362
Alignment:
Q  220 ctccctcaaaaacaacaacagttttcaatctaacaacaccaaccacaagtattttt----ccataatcatgttctaacatcaccaacacaaactctgata 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||    
T  35780208 ctccctcaagaacaacaacagttttcaatctaacaacaccaaccacaagtatttttttttccagaatcatgttctaacatcaccaacacaaactctgata 35780307  T
Q  316 caaaccttcaagaacttaacaacaatcacacaattacaatttccatcaaccaaca 370  Q
    |||||||||||||||| ||||||||||||||| || | |||||||||||||||||    
T  35780308 caaaccttcaagaactcaacaacaatcacacattttcgatttccatcaaccaaca 35780362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 220 - 370
Target Start/End: Complemental strand, 20440079 - 20439925
Alignment:
Q  220 ctccctcaaaaacaacaacagttttcaatctaacaacaccaaccacaagtattttt----ccataatcatgttctaacatcaccaacacaaactctgata 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||    
T  20440079 ctccctcaagaacaacaacagttttcaatctaacaacaccaaccacaagtatttttttttccagaatcatgttctaacatcaccaacacaaactctgata 20439980  T
Q  316 caaaccttcaagaacttaacaacaatcacacaattacaatttccatcaaccaaca 370  Q
    |||||||||||||||| ||||||||||||||| ||   |||||||||||||||||    
T  20439979 caaaccttcaagaactcaacaacaatcacacatttttgatttccatcaaccaaca 20439925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 220 - 370
Target Start/End: Complemental strand, 20445684 - 20445530
Alignment:
Q  220 ctccctcaaaaacaacaacagttttcaatctaacaacaccaaccacaagtattttt----ccataatcatgttctaacatcaccaacacaaactctgata 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||    
T  20445684 ctccctcaagaacaacaacagttttcaatctaacaacaccaaccacaagtatttttttttccagaatcatgttctaacatcaccaacacaaactctgata 20445585  T
Q  316 caaaccttcaagaacttaacaacaatcacacaattacaatttccatcaaccaaca 370  Q
    |||||||||||||||| ||||||||||||||| ||   |||||||||||||||||    
T  20445584 caaaccttcaagaactcaacaacaatcacacatttttgatttccatcaaccaaca 20445530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 18009873 - 18009757
Alignment:
Q  10 tcatcatcttcaactcaaactcataaatatccaaaaaactagaaaaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaac 109  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18009873 tcatcatcttcaactcaa-ctcataaacacccaaaaaactagaaaaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaac 18009775  T
Q  110 aaagctcaacccacaatt 127  Q
     || ||||||||||||||    
T  18009774 caatctcaacccacaatt 18009757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 32234261 - 32234380
Alignment:
Q  12 atcatcttcaactcaaactcataaatatccaaaaaactagaaaaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaacaa 111  Q
    |||||||||||||||||| ||| || | ||||||||  ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  32234261 atcatcttcaactcaaacacatgaacacccaaaaaatcagaaaaacacattcaacaataaatattcttaaatcttcatctctttattccaaatcaaacaa 32234360  T
Q  112 agctcaacccacaattaatt 131  Q
    | ||||||||||||||||||    
T  32234361 atctcaacccacaattaatt 32234380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 32234401 - 32234438
Alignment:
Q  155 ttatatacaaacttcaaaacaaaacacataaccaataa 192  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  32234401 ttatatacaaacttcaaaacaaaactcataatcaataa 32234438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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