View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18412_high_22 (Length: 377)

Name: NF18412_high_22
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18412_high_22
NF18412_high_22
[»] chr2 (4 HSPs)
chr2 (1-367)||(27645909-27646273)
chr2 (219-367)||(27555876-27556026)
chr2 (20-76)||(27555683-27555739)
chr2 (274-341)||(12226045-12226113)
[»] chr4 (2 HSPs)
chr4 (284-365)||(17461519-17461600)
chr4 (284-355)||(13923024-13923095)
[»] chr6 (2 HSPs)
chr6 (286-360)||(15654427-15654502)
chr6 (284-355)||(15883280-15883351)
[»] chr8 (2 HSPs)
chr8 (291-355)||(4930509-4930573)
chr8 (230-272)||(8351472-8351514)
[»] chr5 (1 HSPs)
chr5 (284-337)||(36648284-36648337)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 27645909 - 27646273
Alignment:
Q  1 tttctctcaatgttgatatacctctcaaatgggtaactataataatcaatccataatatctttttgcgaagaagtannnnnnnnnnaaggatgggaaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  27645909 tttctctcaatgttgatatacctctcaaatgggtaactataataatcaatccataatatctttttgcgaagaagtatttttttt--aaggatgggaaaaa 27646006  T
Q  101 gtcatgttgtctactcttcaagtgagaaatattttgaacactatttttaatattcactcttttatcatgtgaaactccttgggtagattatggagttgan 200  Q
    ||||||| ||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||     
T  27646007 gtcatgtcgtctacttttcaagtgagaaatgttatgaacactatttttaatgttcactcttttatcttgtgaaactcgttgggtagattatggagttgat 27646106  T
Q  201 nnnnnnnnnnnnnnnnnatataattactaattgttaatgctactttttcaaggttccatttgaaagcatgtgaattcaattccaaaattgattcaatttc 300  Q
                     |||||||||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  27646107 tttctttttttatttttatataattactaattgttaatgttaatttttcaaggttccatttgagaacatgtgaattcaattccaaaattgattcaatttc 27646206  T
Q  301 tcatattcatccactatatattttatatctccatgtatgttatccaaatacgcaaatttaccctatg 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  27646207 tcatattcatccactatatattttatatctccatgtatgttatccaaatatgcaaattcaccctatg 27646273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 367
Target Start/End: Original strand, 27555876 - 27556026
Alignment:
Q  219 tataattactaattgtta-atgctactttttcaaggttccatttgaaagcatgtgaattcaattccaaaattgattcaatttctcatattcatccactat 317  Q
    ||||| ||||||||| || || ||| ||||| |||||| ||||||| || || |||||||||||| |||||||||| ||||| ||||||  |||||||||    
T  27555876 tataaatactaattgctatatactaattttttaaggtttcatttgagagtatttgaattcaattcaaaaattgatttaatttttcatatcaatccactat 27555975  T
Q  318 ata-ttttatatctccatgtatgttatccaaatacgcaaatttaccctatg 367  Q
    ||| |||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  27555976 atatttttttatctccatgtatgttatccaaataagcaaattcaccctatg 27556026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 27555683 - 27555739
Alignment:
Q  20 acctctcaaatgggtaactataataatcaatccataatatctttttgcgaagaagta 76  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  27555683 acctctcaaatgggtaactataataatcaatccataatatcttcatgcgaagaagta 27555739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 12226045 - 12226113
Alignment:
Q  274 attcaattccaaaattga-ttcaatttctcatattcatccactatatattttatatctccatgtatgtt 341  Q
    |||||||||||||| | | |||||||| |  |||| |||||||||||||||||||||| |||| |||||    
T  12226045 attcaattccaaaaattagttcaatttatggtattaatccactatatattttatatcttcatgcatgtt 12226113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 365
Target Start/End: Complemental strand, 17461600 - 17461519
Alignment:
Q  284 aaaattgattcaatttctcatattcatccactatatattttatatctccatgtatgttatccaaatacgcaaatttacccta 365  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||| | ||||||| ||| |||| ||||    
T  17461600 aaaattgattcaatttctcatattaatctactatatattgtatatcttcatgtatgttgttcaaatacacaagtttatccta 17461519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 13923095 - 13923024
Alignment:
Q  284 aaaattgattcaatttctcatattcatccactatatattttatatctccatgtatgttatccaaatacgcaa 355  Q
    |||||| ||||||||||||||||  ||||| |||||||| || ||||||||||||||| |||||||||||||    
T  13923095 aaaatttattcaatttctcatataaatccattatatattgtacatctccatgtatgttttccaaatacgcaa 13923024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 15654427 - 15654502
Alignment:
Q  286 aattgattcaatttctcatattcatccactatatattt-tatatctccatgtatgttatccaaatacgcaaattta 360  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||| ||||||||| | ||||||||||| ||||    
T  15654427 aattgattcaatttctcatatcaatccactatatatttgtatatctcaatgtatgttgttcaaatacgcaagttta 15654502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 15883351 - 15883280
Alignment:
Q  284 aaaattgattcaatttctcatattcatccactatatattttatatctccatgtatgttatccaaatacgcaa 355  Q
    |||||| ||||||||||||||||  || || |||||||| || |||||| |||||||| |||||||||||||    
T  15883351 aaaatttattcaatttctcatataaattcattatatattgtacatctccgtgtatgttgtccaaatacgcaa 15883280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 4930509 - 4930573
Alignment:
Q  291 attcaatttctcatattcatccactatatattttatatctccatgtatgttatccaaatacgcaa 355  Q
    ||||||||||||||||  ||||| |||||||| || ||||||||||||||| |||||||||||||    
T  4930509 attcaatttctcatataaatccattatatattgtacatctccatgtatgttttccaaatacgcaa 4930573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 8351472 - 8351514
Alignment:
Q  230 attgttaatgctactttttcaaggttccatttgaaagcatgtg 272  Q
    ||||||||||||||||| ||||||||||||| || ||||||||    
T  8351472 attgttaatgctactttctcaaggttccattggagagcatgtg 8351514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 36648284 - 36648337
Alignment:
Q  284 aaaattgattcaatttctcatattcatccactatatattttatatctccatgta 337  Q
    |||||||||||||||||||||||   |||||| |||||||||||| | ||||||    
T  36648284 aaaattgattcaatttctcatataagtccactgtatattttatattttcatgta 36648337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University