View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_high_28 (Length: 336)
Name: NF18412_high_28
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 53033201 - 53032977
Alignment:
| Q |
1 |
acttctcccactgtttctccagttatctaaattaaccaactaatcatacttaattaattaattcaactaaaaatacacatttaatcgttgtagtagtatt |
100 |
Q |
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| T |
53033201 |
acttctcccactgtttctccagttatctaaattaaccaactaatcatacttaattaattaattcaactaaaaatacacatttaatcgttgtagtagtatt |
53033102 |
T |
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| Q |
101 |
gtaaaatccaaatatatatactagtggtagtgattaaagtacgtacctctcttagcataagtgtctttggaatgactctacataagaaaggaggaagaat |
200 |
Q |
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| T |
53033101 |
gtataatccaaatatatatactagtggtagtgattaaagtacgtacctctcttagcataagtgtctttggaatgactctacataagaaagtaggaagaat |
53033002 |
T |
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| Q |
201 |
catgaacacaaaatctatacatata |
225 |
Q |
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||||| |||||||| |||||||||| |
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| T |
53033001 |
catgagcacaaaatgtatacatata |
53032977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 53032960 - 53032848
Alignment:
| Q |
216 |
tatacatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53032960 |
tatatatatagatagaagaataaggaattgaagaaaaagaaaggagggtaccctaagacgtggcgtccaccatcatagacaacttgtgagatacgaccca |
53032861 |
T |
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| Q |
316 |
tcaatcctatgct |
328 |
Q |
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| T |
53032860 |
tcaatcctatgct |
53032848 |
T |
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