View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18412_high_29 (Length: 336)

Name: NF18412_high_29
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18412_high_29
NF18412_high_29
[»] chr1 (12 HSPs)
chr1 (16-322)||(10977116-10977448)
chr1 (1-165)||(11030511-11030679)
chr1 (16-178)||(10931878-10932040)
chr1 (215-323)||(10931706-10931831)
chr1 (115-177)||(10908534-10908596)
chr1 (215-273)||(11030738-11030796)
chr1 (265-318)||(11030805-11030859)
chr1 (271-321)||(11006300-11006350)
chr1 (110-176)||(11006140-11006209)
chr1 (227-277)||(10908416-10908466)
chr1 (233-267)||(11043472-11043506)
chr1 (275-317)||(11043408-11043450)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 10977448 - 10977116
Alignment:
Q  16 tctcatcccatgattcttcacatgttatcagagtgatacccaaggaatgaggacgatccttcctatgaaaatttcagttctgattttgccattaatcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||  |||||||||||||||||||| || ||| |||||||    
T  10977448 tctcatcccatgattcttcacatgttatcagagtgatacccaaggaataaggatgattcttccgttgaaaatttcagttctgattctgacatgaatcatg 10977349  T
Q  116 atatcatagagaaaagcgattctcaattctttggcagttttgtttataatgcaaatattgtaannnnnnnnnnnnnnnatatcaaagttctacaaa---- 211  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||| |  ||        
T  10977348 atatcatgtagaaaagcgattctcaattctttggcagttttgtttataatgcaaatattgtaattattttattttcttatatcaaagttcaattaatgta 10977249  T
Q  212 ----tagatttctttggcaaatagattttacaaagaacacctccatctatttggcatctg------------------agaaaataaacaacggcccctc 289  Q
        |  ||||||||||| |||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||    
T  10977248 ttcctcaatttctttggcgaatagattttacaaagaacacctccatctatttggcatctgggaaaaataaaatacttcagaaaataaacaacggcccctc 10977149  T
Q  290 taagggaaatgtttcctaacttgcatactaaga 322  Q
    |||||||||||||||||||||||||||||||||    
T  10977148 taagggaaatgtttcctaacttgcatactaaga 10977116  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 11030511 - 11030679
Alignment:
Q  1 tataaccctctcaagtctcatcccatgattcttcacatgtta----tcagagtgatacccaaggaatgaggacgatccttcctatgaaaatttcagttct 96  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||| |||||||||||||||||  | ||| ||||  |||||||||||||||||    
T  11030511 tataaccctctcaagtctcatcccatgattcttcacatgttaattatcagattgatacccaaggaatgaacatgatgcttctgatgaaaatttcagttct 11030610  T
Q  97 gattttgccattaatcatgatatcatagagaaaagcgattctcaattctttggcagttttgtttataat 165  Q
    |||| |||||   ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  11030611 gattctgccacggatcatgatatcatggagaaaagcgattctgaagtctttggcagttttgtttataat 11030679  T

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Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 10932040 - 10931878
Alignment:
Q  16 tctcatcccatgattcttcacatgttatcagagtgatacccaaggaatgaggacgatccttcctatgaaaatttcagttctgattttgccattaatcatg 115  Q
    ||||||||||||||||||||||||||| ||||| |||| |||||||||||  ||||  ||||  ||||||||||||||||||||| |||||   ||||||    
T  10932040 tctcatcccatgattcttcacatgttagcagagggatatccaaggaatgaacacgacgcttctgatgaaaatttcagttctgattctgccacggatcatg 10931941  T
Q  116 atatcatagagaaaagcgattctcaattctttggcagttttgtttataatgcaaatattgtaa 178  Q
    ||||||| ||||||||||||||| || |||||||||||||||||||||||  |||||||||||    
T  10931940 atatcatggagaaaagcgattctgaagtctttggcagttttgtttataataaaaatattgtaa 10931878  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 10931831 - 10931706
Alignment:
Q  215 atttctttggcaaatagattttacaaagaacacctccatctatttggcatctg-----------------agaaaataaacaacggcccctctaagggaa 297  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||                 ||||||||||||||||||||||||||||||    
T  10931831 atttctttggcgaatagattttacaaagaacacatccatctatttggcatctgggaaaaataaaatactgagaaaataaacaacggcccctctaagggaa 10931732  T
Q  298 atgtttcctaacttgcatactaagaa 323  Q
    ||||||||||||||||||||||||||    
T  10931731 atgtttcctaacttgcatactaagaa 10931706  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 10908596 - 10908534
Alignment:
Q  115 gatatcatagagaaaagcgattctcaattctttggcagttttgtttataatgcaaatattgta 177  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10908596 gatataatggagaaaagcgattctcaattttttggcagttttgtttataatgcaaatattgta 10908534  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 11030738 - 11030796
Alignment:
Q  215 atttctttggcaaatagattttacaaagaacacctccatctatttggcatctgagaaaa 273  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11030738 atttctttggcgaatagattttacaaagaacacctccatctatttggcatctgggaaaa 11030796  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 11030805 - 11030859
Alignment:
Q  265 ctgagaaaataaacaacggcccctctaa-gggaaatgtttcctaacttgcatact 318  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  11030805 ctgagaaaataaacaacggcccctctaaggggaaatgtttcctaacttgaatact 11030859  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 11006300 - 11006350
Alignment:
Q  271 aaataaacaacggcccctctaagggaaatgtttcctaacttgcatactaag 321  Q
    ||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  11006300 aaataaataatggcccctccaagggaaatgtttcctaacttgcatactaag 11006350  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 11006140 - 11006209
Alignment:
Q  110 atcatgatatcatagagaaaagcgattctcaattc---tttggcagttttgtttataatgcaaatattgt 176  Q
    ||||||||||||| ||||||| || |||| |||||   ||||||||||||||||| ||||||||||||||    
T  11006140 atcatgatatcatggagaaaaacgtttctgaattcggttttggcagttttgtttacaatgcaaatattgt 11006209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 10908466 - 10908416
Alignment:
Q  227 aatagattttacaaagaacacctccatctatttggcatctgagaaaataaa 277  Q
    |||||||||||||| ||||| ||||||||||||||||||||  ||||||||    
T  10908466 aatagattttacaaggaacaactccatctatttggcatctggaaaaataaa 10908416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 11043506 - 11043472
Alignment:
Q  233 ttttacaaagaacacctccatctatttggcatctg 267  Q
    |||||||||||||||||||||||||||||||||||    
T  11043506 ttttacaaagaacacctccatctatttggcatctg 11043472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 11043450 - 11043408
Alignment:
Q  275 aaacaacggcccctctaagggaaatgtttcctaacttgcatac 317  Q
    |||||| ||||||||||||||||||||||||||| || |||||    
T  11043450 aaacaatggcccctctaagggaaatgtttcctaatttacatac 11043408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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