View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_high_33 (Length: 327)
Name: NF18412_high_33
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_high_33 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 31530906 - 31530597
Alignment:
| Q |
18 |
acctcagacttattaaaaagtccttccaccttcggtacgcatagttaataattcaatatttatttttagagagtaattatatttgtctaattattcggtt |
117 |
Q |
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| T |
31530906 |
acctcagacttattaaaaagtccatccaccttcggtaagcatcgttaataattcaatatttatttttagagagtaattatatttgtctaatcattcgatt |
31530807 |
T |
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| Q |
118 |
ttcaggaaaaacgacac-agtaatgnnnnnnnnnaatcagctaatattattaatgagtttgttcaaaaatctaaagatcacttcattaagagattgaact |
216 |
Q |
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| T |
31530806 |
tttaggaaaaacgacattaataat-tttttttttaatcagcaaatattattaaagagtttgttcaaaaatctaaagatcgcttcattaagagattgaact |
31530708 |
T |
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| Q |
217 |
tgactaatttcgatcgataaacttaaaataaactcattattggaaatatgggctcacaaaataagttaaattagacagtcaacatgctaattttatacta |
316 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31530707 |
cgactaatttcgatcgataaacttaacataaactcattattggaaatacgggctcacaaaataaattaaattagacagtcaacatgctaattttatacta |
31530608 |
T |
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| Q |
317 |
tattcttcgac |
327 |
Q |
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| T |
31530607 |
ttttcttcgac |
31530597 |
T |
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