View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_high_35 (Length: 317)
Name: NF18412_high_35
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 57 - 311
Target Start/End: Original strand, 3857732 - 3857986
Alignment:
| Q |
57 |
caattagattgaaaatataacaatttgggctaaggtctctttgaacaattttgtgtgcagttgatggtatcactaccaatgaaattgactgctttacaaa |
156 |
Q |
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| T |
3857732 |
caattagattgaaaatataacaatttgggctaaggtctctttgaacaattttgtgtgcagttgatggtattactaccaatgaaattgactgctttacaaa |
3857831 |
T |
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| Q |
157 |
tgttgatatagttaatttagaccataaaaggtggatctctctacattcaaatgtagataaggtaaagtatattagcttatggtttttatatgatccaatt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3857832 |
tgttgatatagttaatttagaccataaaaggtggatctctctgcattcaaatgtagataaggtaaagtatattagcttatggtttttatatgatccaatt |
3857931 |
T |
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| Q |
257 |
cctactacccaacaaacatttgggactagtacaaagagcatgtatttcttctcac |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3857932 |
cctactacccaacaaacatttgggactagtacaaagagcatgtatttcttctcac |
3857986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 57 - 311
Target Start/End: Original strand, 3866489 - 3866743
Alignment:
| Q |
57 |
caattagattgaaaatataacaatttgggctaaggtctctttgaacaattttgtgtgcagttgatggtatcactaccaatgaaattgactgctttacaaa |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3866489 |
caattagattgaaaatataacaatttgggctaaggtctctttgaacaattttgtgtgcagttgatggtattactaccaatgaaattgactgctttacaaa |
3866588 |
T |
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| Q |
157 |
tgttgatatagttaatttagaccataaaaggtggatctctctacattcaaatgtagataaggtaaagtatattagcttatggtttttatatgatccaatt |
256 |
Q |
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| T |
3866589 |
tgttgatatagttaatttagaccataaaaggtggatctctctgcattcaaatgtagataaggtaaagtatattagcttatggtttttatatgatccaatt |
3866688 |
T |
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| Q |
257 |
cctactacccaacaaacatttgggactagtacaaagagcatgtatttcttctcac |
311 |
Q |
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| T |
3866689 |
cctactacccaacaaacatttgggactagtacaaagagcatgtatttcttctcac |
3866743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 5440237 - 5440182
Alignment:
| Q |
198 |
tacattcaaatgtagataaggtaaagtatattagcttatggtttttatatgatccaa |
254 |
Q |
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| T |
5440237 |
tacattcaaacttagacaaggtaaattaaattagcttatgg-ttttatatgatccaa |
5440182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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