View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_high_38 (Length: 295)
Name: NF18412_high_38
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_high_38 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 33816429 - 33816706
Alignment:
| Q |
18 |
ctatattctaatcttgtcatataaaaaataatctactcctatgttttaattcactaaacataatatttttcacttacattattttgaattcctactactc |
117 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33816429 |
ctatgttctaatcttgtcatataaaaaatagtctactcctatgttttaattcactaaacataatatttttcacttacattattttgaattcctactactc |
33816528 |
T |
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| Q |
118 |
cagtaattaaggagnnnnnnngtgtatcatgattattaaactttggttaacaggtatcaaagtcagcacaagtttgaacagaccaggctctaatgctggg |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
33816529 |
cagtaattaaggagtttttttgtgtatcatgattattaaactttggtttacaggtatcaaagtcagcacaagtttgaactgaccatgctctaatgctgga |
33816628 |
T |
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| Q |
218 |
gttggaaggttcctatgcgtgtgctcctctctttttaactattattaccaatgtcgtaatttcatatatatgcggtca |
295 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33816629 |
gttggaaggtccctatgcgtgtgctcctctctttttaactattattaccaatgtcgtaatttcatatatatgcggtca |
33816706 |
T |
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