View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_high_4 (Length: 577)
Name: NF18412_high_4
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 43657894 - 43657573
Alignment:
| Q |
17 |
cagagaaccggtactttcctttgagaaaattggcatggatattatgccattgattgcgagatatatgaagtgcatgtattatgttaacatcactgtatga |
116 |
Q |
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| T |
43657894 |
cagagaaccggtactttcctttgagaaaatcggcatggatattatgccattgattgcgagatatatgaagtgcatgtattatgttaacatcactgtatga |
43657795 |
T |
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| Q |
117 |
gcaggcaggattgtgaatgaaattacaagcaggtaccaaagacaaaaaaccatagattttgatatctatattcttttttcttttgaaggactttagcaat |
216 |
Q |
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| T |
43657794 |
gcaggcaggattgtgagtgcaattacaagcaggtaccaaagacaaaaaaccatagattttgatatctatattcttttttcttttgaaggactttagcaat |
43657695 |
T |
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| Q |
217 |
ggtaattaaggaactccattttttgtacacaagcctagcattatcgagactttcgaatggaactcgatccaaacacatttcaagaatatcattgggaaga |
316 |
Q |
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| T |
43657694 |
ggtaatcaaggaactccattttttgcacacaagcctagcattatcgagactttcgcatgcaacacgatccaaacacatttcaagaataccatcgggaaga |
43657595 |
T |
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| Q |
317 |
agaaaaatttcggactttactt |
338 |
Q |
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| T |
43657594 |
agaaagatttcggactttactt |
43657573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 43657552 - 43657501
Alignment:
| Q |
341 |
tgttgtatattccaaaacctctccttcaccccaaagccacatttgaagaagc |
392 |
Q |
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| T |
43657552 |
tgttgtctattccaaaacctctccttcaccccaaagccacatgagaagaagc |
43657501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 10367471 - 10367374
Alignment:
| Q |
224 |
aaggaactccattttttgtacacaagcctagcattatcgagactttcgaatggaactcgatccaaacacatttcaagaatatcattgggaagaagaaa |
321 |
Q |
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| T |
10367471 |
aaggaactccaattcttgcaaacaagcctaacattcttgagaccttcgaatggaagacgatccaaacacaattcaagaatgtcatcaggaagaagaaa |
10367374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 224 - 338
Target Start/End: Complemental strand, 10378996 - 10378882
Alignment:
| Q |
224 |
aaggaactccattttttgtacacaagcctagcattatcgagactttcgaatggaactcgatccaaacacatttcaagaatatcattgggaagaagaaaaa |
323 |
Q |
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| T |
10378996 |
aaggaactccaattcttgcaagcaagcctaacattcttgagactttcaaatggaagacaattcaaacacaattcaagaatgtcatcaggaagaagaaaga |
10378897 |
T |
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| Q |
324 |
tttcggactttactt |
338 |
Q |
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| T |
10378896 |
tttcggactgtactt |
10378882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 10371120 - 10371031
Alignment:
| Q |
218 |
gtaattaaggaactccattttttgtacacaagcctagcattatcgagactttcgaatggaactcgatccaaacacatttcaagaatatcat |
308 |
Q |
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| T |
10371120 |
gtaattaaggaactccattatttgaacacgagcctagcattctaggaacttttgagtggaa-accacccaaacacatttgaagaatatcat |
10371031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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