View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18412_high_5 (Length: 568)

Name: NF18412_high_5
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18412_high_5
NF18412_high_5
[»] chr7 (5 HSPs)
chr7 (179-555)||(41689006-41689382)
chr7 (1-179)||(41688797-41688965)
chr7 (185-310)||(41681723-41681848)
chr7 (476-529)||(41682029-41682083)
chr7 (20-148)||(41681512-41681643)
[»] chr4 (7 HSPs)
chr4 (1-63)||(44668654-44668716)
chr4 (1-63)||(44687930-44687992)
chr4 (1-38)||(45095432-45095469)
chr4 (278-311)||(45095803-45095836)
chr4 (1-60)||(45088971-45089030)
chr4 (253-306)||(44669009-44669062)
chr4 (253-306)||(44688285-44688338)
[»] chr8 (1 HSPs)
chr8 (180-233)||(42694112-42694165)
[»] chr1 (7 HSPs)
chr1 (1-42)||(43983367-43983408)
chr1 (1-37)||(43986176-43986212)
chr1 (181-228)||(43908127-43908174)
chr1 (196-235)||(43993934-43993973)
chr1 (1-60)||(44004768-44004827)
chr1 (1-55)||(43908406-43908460)
chr1 (255-307)||(43986536-43986588)
[»] chr2 (2 HSPs)
chr2 (181-235)||(20578413-20578467)
chr2 (5-59)||(24002338-24002392)


Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 179 - 555
Target Start/End: Original strand, 41689006 - 41689382
Alignment:
Q  179 atgggaaatttggaatagttttccaagaatcttcgccaaaggtataaattttggtcagataatcattcgtattgtgcacaactagtagcaccttatattt 278  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41689006 atgggaaatttggaatagttttccaagaatcttcaccaaaggtataaattttggtcagataatcattcgtattgtgcacaactagtagcatcttatattt 41689105  T
Q  279 gtcgttaacttgatcatagccaaagccataatagcaatgcacgcaatcaagcgatgaagattttggagaatttttggatataaacctgatagaaaggttg 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41689106 gtcgttaacttgatcatagccaaagccataatagcaatgcacgcaatcaagcgatgaagattttggagaatttttggatataaacctgatagaaaggttg 41689205  T
Q  379 tatagactgaaactatgttgagagctaatatacatacacaacaacccattgcatgaacctagaatattgcgagacgtagtgactgtgaagctaccaggtt 478  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41689206 tatagactgaaactacgttgagagctaatatacatacacaacaacccatagcatgaacctagaatattgcgagacgtagtgactgtgaagctaccaggtt 41689305  T
Q  479 caacacaggttaatgagttttcgaacaatggcttaaagggtaagaatagatcctgcagttgttgagttcacatatat 555  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41689306 caacacgggttaatgagttttcgaacaatggcttaaagggtaagaatagatcctgcagttgttgagttcacatatat 41689382  T

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Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 41688797 - 41688965
Alignment:
Q  1 tttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgttnnnnnnncacacacaaagacaattactcaaaacatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||        |||||||    
T  41688797 tttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgttaaaaaa--acacacaaagacaa--------aacatac 41688886  T
Q  101 agcatatctttgcacatgtagtcaccatcactttgaggcagcaacactaacacctcttttatcatccatccaattcaga 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41688887 agcatatctttgcacatgtagtcaccatcactttgaggcagcaacagtaacacctcttttatcatccatccaattcaga 41688965  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 41681723 - 41681848
Alignment:
Q  185 aatttggaatagttttccaagaatcttcgccaaaggtataaattttggtcagataatcattcgtattgtgcacaactagtagcaccttatatttgtcgtt 284  Q
    ||||| ||||||||| | ||||||||||  |||||||||||| | ||||||||||||||||  ||||| ||||||| | |||||||| |||  |||| ||    
T  41681723 aatttagaatagtttcctaagaatcttcttcaaaggtataaagtatggtcagataatcattgttattgcgcacaacgactagcacctcataactgtcatt 41681822  T
Q  285 aacttgatcatagccaaagccataat 310  Q
    ||||||||||||||||||||||||||    
T  41681823 aacttgatcatagccaaagccataat 41681848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 476 - 529
Target Start/End: Original strand, 41682029 - 41682083
Alignment:
Q  476 gttcaacacaggttaatgagttttcgaacaatggctt-aaagggtaagaatagat 529  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||    
T  41682029 gttcaacacgggtcaatgagttttcgaacaatggcttcaaagggtaagaatagat 41682083  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 41681512 - 41681643
Alignment:
Q  20 actctatactctttcatcaaccatgcaacccaatgagttttgttnnnnnnncacacacaaagacaattactcaaaacataca---gcatatctttgcaca 116  Q
    |||| ||||||||||||||||||  ||||||||||||| |||||       ||||||||||| | || ||||||||||| ||    |||||||||| | |    
T  41681512 actccatactctttcatcaaccacacaacccaatgagtcttgttcaaaaaacacacacaaaggcgatcactcaaaacatgcatattcatatctttgtata 41681611  T
Q  117 tgtagtcaccatcactttgaggcagcaacact 148  Q
     | ||||||| ||||||||||||| |||||||    
T  41681612 cgaagtcaccgtcactttgaggcaacaacact 41681643  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 44668654 - 44668716
Alignment:
Q  1 tttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgtt 63  Q
    ||||||||||||||||||||||| |||||||||||||| |||  |||||||||||||||||||    
T  44668654 tttagtccatgactcaacaactccatactctttcatcatccacacaacccaatgagttttgtt 44668716  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 44687930 - 44687992
Alignment:
Q  1 tttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgtt 63  Q
    ||||||||||||||||||||||| |||||||||||||| |||  |||||||||||||||||||    
T  44687930 tttagtccatgactcaacaactccatactctttcatcatccacacaacccaatgagttttgtt 44687992  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45095432 - 45095469
Alignment:
Q  1 tttagtccatgactcaacaactctatactctttcatca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  45095432 tttagtccatgactcaacaactccatactctttcatca 45095469  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 45095803 - 45095836
Alignment:
Q  278 tgtcgttaacttgatcatagccaaagccataata 311  Q
    ||||||||||||||||||||||||||||||||||    
T  45095803 tgtcgttaacttgatcatagccaaagccataata 45095836  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 45088971 - 45089030
Alignment:
Q  1 tttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagtttt 60  Q
    ||||| ||| ||||||| ||||| |||||||||||||| |||  ||||||||||||||||    
T  45088971 tttagcccacgactcaataactccatactctttcatcatccacacaacccaatgagtttt 45089030  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 44669009 - 44669062
Alignment:
Q  253 tgcacaactagtagcaccttatatttgtcgttaacttgatcatagccaaagcca 306  Q
    |||||||||  ||| ||||| ||  |||||||||||||||||||||||||||||    
T  44669009 tgcacaactgctaggaccttgtacctgtcgttaacttgatcatagccaaagcca 44669062  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 44688285 - 44688338
Alignment:
Q  253 tgcacaactagtagcaccttatatttgtcgttaacttgatcatagccaaagcca 306  Q
    |||||||||  ||| ||||| ||  |||||||||||||||||||||||||||||    
T  44688285 tgcacaactgctaggaccttgtacctgtcgttaacttgatcatagccaaagcca 44688338  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 42694165 - 42694112
Alignment:
Q  180 tgggaaatttggaatagttttccaagaatcttcgccaaaggtataaattttggt 233  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||    
T  42694165 tgggaaatttggaacagttttccaagaattttcaccaaaggtataaattctggt 42694112  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43983367 - 43983408
Alignment:
Q  1 tttagtccatgactcaacaactctatactctttcatcaacca 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  43983367 tttagtccatgactcaacaactccatactctttcatcaacca 43983408  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43986176 - 43986212
Alignment:
Q  1 tttagtccatgactcaacaactctatactctttcatc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  43986176 tttagtccatgactcaacaactccatactctttcatc 43986212  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 43908174 - 43908127
Alignment:
Q  181 gggaaatttggaatagttttccaagaatcttcgccaaaggtataaatt 228  Q
    ||||||||||||| || ||||||||||| ||| |||||||||||||||    
T  43908174 gggaaatttggaagagatttccaagaattttcaccaaaggtataaatt 43908127  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 43993934 - 43993973
Alignment:
Q  196 gttttccaagaatcttcgccaaaggtataaattttggtca 235  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  43993934 gttttccaagaattttcaccaaaggtataaattttggtca 43993973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44004768 - 44004827
Alignment:
Q  1 tttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagtttt 60  Q
    |||||||||||||||| |||||| |||||||||||||| |||  ||  ||||||||||||    
T  44004768 tttagtccatgactcagcaactccatactctttcatcatccacacagtccaatgagtttt 44004827  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43908460 - 43908406
Alignment:
Q  1 tttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatga 55  Q
    |||||||||||||| | |||||| |||||||||||||| |||| ||| |||||||    
T  43908460 tttagtccatgacttagcaactccatactctttcatcatccatacaatccaatga 43908406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 43986536 - 43986588
Alignment:
Q  255 cacaactagtagcaccttatatttgtcgttaacttgatcatagccaaagccat 307  Q
    |||||||| ||||||||| || |||||||||| ||| ||||||||||| ||||    
T  43986536 cacaactactagcaccttgtacttgtcgttaatttggtcatagccaaaaccat 43986588  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 20578413 - 20578467
Alignment:
Q  181 gggaaatttggaatagttttccaagaatcttcgccaaaggtataaattttggtca 235  Q
    |||||||||||||| |||||| ||||||  || ||||| ||||||||||||||||    
T  20578413 gggaaatttggaatggttttcaaagaattctcaccaaaagtataaattttggtca 20578467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 24002392 - 24002338
Alignment:
Q  5 gtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttt 59  Q
    |||||||||||||||||||  |||| |||||||| |||  |||||||||||||||    
T  24002392 gtccatgactcaacaactccgtactttttcatcatccacacaacccaatgagttt 24002338  T

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