View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_high_50 (Length: 251)
Name: NF18412_high_50
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 44667461 - 44667233
Alignment:
| Q |
1 |
aatgaagataacaaagaatactacaagcatcacaaagcgtctccaatatcggagtttgagtttgcagatacaagaaagcctgcggaacgtgtcatgcacg |
100 |
Q |
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| T |
44667461 |
aatgaagataacaaagaatactacaagcatcacaaagcgtctccaatatcggagtttgagtttgcagatacaagaaagcctgcggaacgtgtcatgcacg |
44667362 |
T |
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| Q |
101 |
ggactgtggatgctaaacaaaatggagatgtgattggttggttgccggaacagcttgaaactgcggaggagactttgttgagggcggctgagatgtggcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44667361 |
ggactgtggatgctaaacaaaatggagatgtgattggttggttgccggaacagcttgaaactgcggaggagactttgttgagggcggctgagatgtggcg |
44667262 |
T |
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| Q |
201 |
gcagagggctatgcgtggtgaccctgatg |
229 |
Q |
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| T |
44667261 |
gcagagggctatgcgtggtgaccctgatg |
44667233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8374247 - 8374476
Alignment:
| Q |
1 |
aatgaagataacaaagaatactac-aagcatcacaaagcgtctccaatatcggagtttgagtttgcagatacaagaaagcctgcggaacgtgtcatgcac |
99 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| |
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| T |
8374247 |
aatgaagataacaaataatactattaagcatcacaaagcgtctccgatatcagagttcaagtttgcatatacaagaaagcctgtggaacgtgtcatgcac |
8374346 |
T |
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| Q |
100 |
gggactgtggatgctaaacaaaatggagatgtgattggttggttgccggaacagcttgaaactgcggaggagactttgttgagggcggctgagatgtggc |
199 |
Q |
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||||| | ||||||||||| || ||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||| |
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| T |
8374347 |
gggaccgcagatgctaaacatgatagagatgtgattggttggttgccggaacagctctaaccagcggaggagactttgttgagggctgctgagatgtggc |
8374446 |
T |
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| Q |
200 |
ggcagagggctatgcgtggtgaccctgatg |
229 |
Q |
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| T |
8374447 |
ggcagaggtctatgcatggtgaccctgatg |
8374476 |
T |
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