View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_high_56 (Length: 237)
Name: NF18412_high_56
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 37721833 - 37722038
Alignment:
| Q |
15 |
caaaggggtttgaagagagggttgaaattgaaggtgttgggttaattgtgagagattgggccccacaattggaaattttaagtcattcttctataggtgg |
114 |
Q |
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| T |
37721833 |
caaaggggtttgaagagagggttgaaattgaaggtgttgggttaattgtgagagattgggccccacaattggaaattttaagtcattcttctataggtgg |
37721932 |
T |
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| Q |
115 |
ttttatgagtcattgtggatggaattcttgtatggagagtattactatgggggtgccaatagcagcatggcctatgcactctgaccaacctaggaacaga |
214 |
Q |
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| T |
37721933 |
ttttatgagtcattgtggatggaattcttgtatggagagtattactatgggggtgccaatagcagcatggcctatgcactctgaccaacctaggaacaga |
37722032 |
T |
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| Q |
215 |
gtttta |
220 |
Q |
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|||||| |
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| T |
37722033 |
gtttta |
37722038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 1609420 - 1609561
Alignment:
| Q |
60 |
ttgtgagagattgggccccacaattggaaattttaagtcattcttctataggtggttttatgagtcattgtggatggaattcttgtatggagagtattac |
159 |
Q |
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| T |
1609420 |
ttgtgagggattgggcaccccagttggaaattctaagccacccttcaacaggagggtttatgagtcattgcggatggaactctactttagagagcatttc |
1609519 |
T |
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| Q |
160 |
tatgggggtgccaatagcagcatggcctatgcactctgacca |
201 |
Q |
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| T |
1609520 |
aatgggggtgccaatagcagcatggcctatgcattctgacca |
1609561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 10162422 - 10162566
Alignment:
| Q |
60 |
ttgtgagagattgggccccacaattggaaattttaagtcattcttctataggtggttttatgagtcattgtggatggaattcttgtatggagagtattac |
159 |
Q |
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| T |
10162422 |
ttgtgagggattgggcaccccagttggaaattctaagccacccttcaacgggagggtttatgagtcattgtggatggaactctaccttagagaccatttc |
10162521 |
T |
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| Q |
160 |
tatgggggtgccaatagcagcatggcctatgcactctgaccaacc |
204 |
Q |
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| T |
10162522 |
aatgggggtgccaatagcagcatggcctatgcattctgaccaacc |
10162566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 30999567 - 30999611
Alignment:
| Q |
97 |
tcattcttctataggtggttttatgagtcattgtggatggaattc |
141 |
Q |
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| T |
30999567 |
tcattcttctataggtggattttggagtcattgtggatggaattc |
30999611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 31002731 - 31002775
Alignment:
| Q |
97 |
tcattcttctataggtggttttatgagtcattgtggatggaattc |
141 |
Q |
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| T |
31002731 |
tcattcttctataggtggattttggagtcattgtggatggaattc |
31002775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 30988964 - 30989008
Alignment:
| Q |
97 |
tcattcttctataggtggttttatgagtcattgtggatggaattc |
141 |
Q |
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|||||||||||||||||| ||| ||| ||||||||||||||||| |
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| T |
30988964 |
tcattcttctataggtggattttggagccattgtggatggaattc |
30989008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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