View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_high_7 (Length: 555)
Name: NF18412_high_7
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 6 - 544
Target Start/End: Original strand, 39155734 - 39156272
Alignment:
| Q |
6 |
aggtagaacaacaatcatcatcgctcatcgcctttccacgattcgtaaggccgattcaatagtagttcttcaatcaggaagggaggttgaaagtggttct |
105 |
Q |
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| T |
39155734 |
aggtagaacaacaatcatcatcgctcatcgcctttccacgattcgtaaggctgattcaatagtagttcttcaatcaggaagggtggttgaaagtggttct |
39155833 |
T |
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| Q |
106 |
cacaatgagctactccaactgaacaatggacaaggtggggtttacaccaaaatgctaaatttgcagcaaacaagtcaaaatgaaaatgcacagcatcaaa |
205 |
Q |
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| T |
39155834 |
cacaatgagctactccaactgaacaatggacaaggtggggtttacaccgaaatgctaaatttgcagcaaacaagtcaaaatgaaaatgcacagcatcaaa |
39155933 |
T |
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| Q |
206 |
taaacaagagccctcgtgcaatggaaaatccaataacaagttcaaatccaagccggaaaagtactccaattcatcatgcatttagccctgcacaaccatt |
305 |
Q |
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| T |
39155934 |
taaacaagagccctcgtgcaatggaaaatccaataacaagttcaaatccaagccggaaaagtactccaattcatcatgcatttagccctgcacaaccatt |
39156033 |
T |
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| Q |
306 |
tagtcccatatattcaatcagtgttatcggctctagctttgatgatgactacagcagtgaaaacttggagaaaccttacaaatcaaacatctctcactgg |
405 |
Q |
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| T |
39156034 |
tagtcccatatattcaatcagtgttatcggctctagctttgatgatgactacagcagtgaaaacgtggagaaaccttacaaatcaaacatctctcactgg |
39156133 |
T |
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| Q |
406 |
cgtttgctacaaatgaatgctcctgagtggaagtatgctttgtttggatgtttaggggccattggctcaggaatatgccaaccattttattcctattgct |
505 |
Q |
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| T |
39156134 |
cgtttgctacaaatgaatgctcctgagtggaagtatgctttgtttggatgtttaggggccattggctcaggaatatgccaaccattttattcctattgct |
39156233 |
T |
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| Q |
506 |
taggaatagttgcttctgtctatttcattgatgataatg |
544 |
Q |
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| T |
39156234 |
taggaatagttgcttctgtctatttcattgatgataatg |
39156272 |
T |
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