View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_1 (Length: 835)
Name: NF18412_low_1
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 27778745 - 27778801
Alignment:
| Q |
125 |
aatcatagaagtttgacaatattttttacatccatgtggaaaagtttcaattatatt |
181 |
Q |
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| T |
27778745 |
aatcataaaagtttgacaatattttttacatccatgtggaaaagtttcaattatatt |
27778801 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 20742683 - 20742723
Alignment:
| Q |
174 |
attatattgtcaaactaacaagtcttgcaaacatgtgaaat |
214 |
Q |
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| T |
20742683 |
attatattgtcaaactaacaagtcttgcaaacttgtgaaat |
20742723 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 5361683 - 5361723
Alignment:
| Q |
173 |
aattatattgtcaaactaacaagtcttgcaaacatgtgaaa |
213 |
Q |
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| T |
5361683 |
aattatattgtcaaattaacaagtcttgcaaacatgtgaaa |
5361723 |
T |
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