View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_10 (Length: 515)
Name: NF18412_low_10
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 36424451 - 36424939
Alignment:
| Q |
17 |
caatgtcttcttccacagcttcaaaactcctcacactaatcatatctgcatttgccattgtgcaaataacactagctggtgatccagacatccttactga |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424451 |
caatgtcttcttccacagcttcaaaactcctcacactaatcatatctgcatttgccattgtgcaaataacactagctggtgatccagacatccttactga |
36424550 |
T |
|
| Q |
117 |
cttcatagccccaaatggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424551 |
cttcatagccccaaatggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtg |
36424650 |
T |
|
| Q |
217 |
gcattgaaagcaagtaaaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacata |
316 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36424651 |
gcattgaaagcaagcaaaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacaca |
36424750 |
T |
|
| Q |
317 |
cacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424751 |
cacaccctcgttcagccgagctactcttcctcgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacc |
36424850 |
T |
|
| Q |
417 |
cggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcctttg |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36424851 |
cggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcggcctttg |
36424939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 36420927 - 36421415
Alignment:
| Q |
17 |
caatgtcttcttccacagcttcaaaactcctcacactaatcatatctgcatttgccattgtgcaaataacactagctggtgatccagacatccttactga |
116 |
Q |
| |
|
||||||||||||||||| | |||||| | || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |
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| T |
36420927 |
caatgtcttcttccacaacatcaaaaatgctaacactaatcatatctgcatttgccattgtgcaaataacattagctggtgatccggacatcctcactga |
36421026 |
T |
|
| Q |
117 |
cttcatagccccaaatggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36421027 |
cttcatagccccaaatggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtg |
36421126 |
T |
|
| Q |
217 |
gcattgaaagcaagtaaaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacata |
316 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36421127 |
gcattgaaagcaagcaaaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacata |
36421226 |
T |
|
| Q |
317 |
cacaccctcgttcagccgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| ||||| |
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|
| T |
36421227 |
cacaccctcgttcagccgagctactcttcctcgttaaaggttcccttaatgttggttttgttgacacaaccaataagctattcactcagacactacaacc |
36421326 |
T |
|
| Q |
417 |
cggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcctttg |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36421327 |
tggtgacatgtttgtgtttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcggcctttg |
36421415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 33 - 505
Target Start/End: Original strand, 36427440 - 36427912
Alignment:
| Q |
33 |
agcttcaaaactcctcacactaatcatatctgcatttgccattgtgcaaataacactagctggtgatccagacatccttactgacttcatagccccaaat |
132 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| | |
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| T |
36427440 |
agcttcaaaaatgctaacactaatcatatctgcatttgccattgtgcaaataacactagctagtgatccagacatcctcactgatttcatagccccaact |
36427539 |
T |
|
| Q |
133 |
ggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaaccctcatttttcgtagcattgaaagcaagta |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| |||||| |||| ||| ||||||||||| | |
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| T |
36427540 |
ggaacccaagttgatggcaacttcttcacattcaccggtttccgcgcacttcttccaccaaacatacagccctcaactttcaaagccttgaaagcaagca |
36427639 |
T |
|
| Q |
233 |
aaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagc |
332 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36427640 |
aagcagaatttccagctcttgacggacaaagtgtcgcatatgctgctctaatatacccacctggaaccatcaatccaccacacacacaccctcgttcagc |
36427739 |
T |
|
| Q |
333 |
cgagctactcttccttgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacactcaaacacttcaacccggtgacatgtttgtg |
432 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||||||||||| || ||||| || || ||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
36427740 |
cgagctactcttcctcgcgaaaggttccctgaatgttggttttgtggacaccactaataagctattcactcaaacactacaacccggtgacatgtttgtg |
36427839 |
T |
|
| Q |
433 |
tttccaaagggacttgttcattttcaattcaattctaatactacaaaatctgctttagctttttcagcctttg |
505 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||| ||||| ||||||| |||||||| ||||||| |
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|
| T |
36427840 |
tttccaaagggacttgttcattttcagttcaatgctgatacttcaaaacctgctttggctttttctgcctttg |
36427912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 386
Target Start/End: Original strand, 19148343 - 19148475
Alignment:
| Q |
254 |
atggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagctactcttccttgttaa |
353 |
Q |
| |
|
||||||||||||| |||||||||||||| | || |||| | ||| ||||||||||| |||||||| |||||||| || |||||||| ||||| | |
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|
| T |
19148343 |
atggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccacgttcagctgaactactctttgttgttca |
19148442 |
T |
|
| Q |
354 |
aggttcccttaatgttggtttcgttgacacaac |
386 |
Q |
| |
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|||||| ||| | ||||| || ||||||||||| |
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|
| T |
19148443 |
aggttcacttcaagttgggtttgttgacacaac |
19148475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 384
Target Start/End: Complemental strand, 19144650 - 19144520
Alignment:
| Q |
254 |
atggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagctactcttccttgttaa |
353 |
Q |
| |
|
||||||||||||| |||||||||||||| | || |||| | ||| ||||||||||| |||||||| |||||||| || |||||||| ||||| | |
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|
| T |
19144650 |
atggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccacgttcagctgaactactctttgttgttca |
19144551 |
T |
|
| Q |
354 |
aggttcccttaatgttggtttcgttgacaca |
384 |
Q |
| |
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|||||| ||| | ||||| || ||||||||| |
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|
| T |
19144550 |
aggttcacttcaagttgggtttgttgacaca |
19144520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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