View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_11 (Length: 499)
Name: NF18412_low_11
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 27946969 - 27946588
Alignment:
| Q |
18 |
tgatgctgctatttgttaatagtttgatttgataataagaatatataaataagattccgaactatctatccgtcacaactattgttgcaggaggagatag |
117 |
Q |
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| T |
27946969 |
tgatgctgctatttgttaatagtttgatttgataataagaatatataaataagattccgaactatctatccgtcacaactattgttgcaggaggagatag |
27946870 |
T |
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| Q |
118 |
acatatcctataatttaaagttgcagcagtcaaagaactccataagttggtagtgcaatgcactctttattggtcatgtagagcttttgaggtcaaatgg |
217 |
Q |
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| T |
27946869 |
acatatcctataatttaaagttgcagcagtcaaagaactccataagttggtagtgcaatgcactctttattggtcatgtagagcttttgaggtcaaatgg |
27946770 |
T |
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| Q |
218 |
ggtcacaacatttgcagttgtctcaattagtcccttatgacaaagcaagatagtgaatgtttgttttatttatagaaggggtttgattgagtcatgaatt |
317 |
Q |
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| T |
27946769 |
ggtcaaaacatttgcagttgtctcaattagtcccttgtgacaaagcaagatagtgaatgtttgttttatttatagaaggggtttgattgagtcatgaatt |
27946670 |
T |
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| Q |
318 |
aatatacaaagcaacattgtttattggttattagcagaaatgttctaatcgatgaacaagacaaaaaacactttatcaacta |
399 |
Q |
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| T |
27946669 |
aatatacaaagcaacattgtttattggttattagcagaaatgttctaatcgatgaacaagacaaaaaacactttatcaacta |
27946588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 253 - 385
Target Start/End: Complemental strand, 27439721 - 27439590
Alignment:
| Q |
253 |
tatgacaaagcaagatagtgaatgtttgttttatttatagaaggggtttgattgagtcatgaattaatatacaaagcaacattgtttattggttattagc |
352 |
Q |
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| T |
27439721 |
tatgacaaagcaagatagtgaatgtttgttttgtttatagaaggggtttgattgagtcatgaattaatatagcaagcaacattgtttgtt-gttattggc |
27439623 |
T |
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| Q |
353 |
agaaatgttctaatcgatgaacaagacaaaaaa |
385 |
Q |
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| T |
27439622 |
agaaatattctaatggatgaacaagacaaaaaa |
27439590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 394 - 488
Target Start/End: Complemental strand, 27946566 - 27946471
Alignment:
| Q |
394 |
caactagttcttacaaacatgcatctccaccataaaacatcatcatatattctttgat-gcattcctcttatcagtcttggctagccttcatctca |
488 |
Q |
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| T |
27946566 |
caactagttcttacaaacatgcatctccaccataaaacatcatcatatattctttgatggcattcctcttatcagtcttggctagcctttatctca |
27946471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 247 - 399
Target Start/End: Complemental strand, 27442503 - 27442350
Alignment:
| Q |
247 |
gtcccttatgacaaagcaagatagtgaatgtttgttttatttatagaaggggtttgattgagtcatgaattaatatacaaagcaacattgtttattggtt |
346 |
Q |
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| T |
27442503 |
gtcccctatgaaaaatcaagttagtgaatgtttgttttgtttatacaaggggtttgattgagtgatgaactaatatagcaagcaacattttttgttggct |
27442404 |
T |
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| Q |
347 |
attagcagaaatgttctaatcgatgaacaagacaaaaaacac-tttatcaacta |
399 |
Q |
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| T |
27442403 |
attggcagaaatgttctaatggttgaacaagacaaaaaaaacttttatcaacta |
27442350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 28219705 - 28219801
Alignment:
| Q |
103 |
tgcaggaggagatagacatatcctataatttaaagttgcagcagtcaaagaactccataagttggtagtgcaatgcactctttattggtcatgtaga |
199 |
Q |
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| T |
28219705 |
tgcaggaggagatagaaagatcctataatttaaagttgcagcagtcaaagaactccataggttggtagtgcaatgcattattgactggtcatgtaga |
28219801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 28215400 - 28215466
Alignment:
| Q |
133 |
taaagttgcagcagtcaaagaactccataagttggtagtgcaatgcactctttattggtcatgtaga |
199 |
Q |
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| T |
28215400 |
taaagttgcagcagtcaaagaactccataggttggtagtgcaatgcattcttgactggtcatgtaga |
28215466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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