View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18412_low_12 (Length: 498)
Name: NF18412_low_12
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_12 |
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| [»] scaffold0267 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 21 - 479
Target Start/End: Original strand, 20475413 - 20475868
Alignment:
| Q |
21 |
aggtctaatgaaataatgcagaagaaaaccaccaatatcttgtaattcttatcgatacagaaagtttggagcaaatgaaataaatagcaaatggagaaac |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20475413 |
aggtctaatgaaataatgcagaagaaaaccaccaatatcttgtaattcttatcgatacaaaaagtttggagcaaatgaaataaatagcaaatggagaaac |
20475512 |
T |
|
| Q |
121 |
aaaaattaactcaggttattttatctgcaataagttcaaaactaattgacataaaattaaaacatcataatccaatctaaagattttgatccaacaacta |
220 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20475513 |
aaaaattaactcagtttattttatctgcaataagttcaaaactaattgacataaaattaaaacatcataatccaatctaaagattttgatccaacaacta |
20475612 |
T |
|
| Q |
221 |
gcaaaaaactgccaacggaatcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20475613 |
gcaaaaaactgccaacggaatcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatc |
20475712 |
T |
|
| Q |
321 |
taaaataaattcagaaaaataaatagttgttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcatcaaaaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20475713 |
taaaataaattcagaaaaataaatagttgttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcatcaaaaa |
20475812 |
T |
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| Q |
421 |
tttggttgttaggaagttcaacatattcaattctattatctctctgattatacataata |
479 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20475813 |
tt---gtgttaggaagttcaacatattcaattctattatctctctgattatacttaata |
20475868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 239 - 498
Target Start/End: Complemental strand, 13805 - 13546
Alignment:
| Q |
239 |
aatcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaa |
338 |
Q |
| |
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|||||||||||||||| || |||||| | |||||||||| |||||| |||||||||| | | ||||||| | || || |||| |||||||||||||| |
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| T |
13805 |
aatcatccaacaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaacctaacataaattcagaaaa |
13706 |
T |
|
| Q |
339 |
ataaatagttgttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcatcaaaaatttggttgttaggaagtt |
438 |
Q |
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| ||| | ||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||| |||| ||||| | |||||||||||||| ||||| |
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| T |
13705 |
acaaacatttgttgcatacgagattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcataacgaatttggttgttagaaagtt |
13606 |
T |
|
| Q |
439 |
caacatattcaattctattatctctctgattatacataatagcttcatcctcttcttcgc |
498 |
Q |
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||||| ||||| | |||| |||||||||||||||||||||||||||||||||||| |
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| T |
13605 |
caacaggttcaacaatgccatctttctgattatacataatagcttcatcctcttcttcgc |
13546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 239 - 498
Target Start/End: Complemental strand, 3838324 - 3838065
Alignment:
| Q |
239 |
aatcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaa |
338 |
Q |
| |
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||||||||| |||||| || |||||| | |||||||||| |||||| |||||||||| | | ||||||| | || || |||| |||||||||||||| |
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| T |
3838324 |
aatcatccagcaaaatagtcaaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaacctaacataaattcagaaaa |
3838225 |
T |
|
| Q |
339 |
ataaatagttgttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcatcaaaaatttggttgttaggaagtt |
438 |
Q |
| |
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| ||| ||||||||||| || ||||| |||| ||||| |||||||||||||||||||||||| || | ||||| | |||||||||||||| ||||| |
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| T |
3838224 |
acaaacagttgttgcatacgagattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataacgaatttggttgttagaaagtt |
3838125 |
T |
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| Q |
439 |
caacatattcaattctattatctctctgattatacataatagcttcatcctcttcttcgc |
498 |
Q |
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||||| ||||| | |||| |||||||||||||||||||||||||||||||||||| |
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| T |
3838124 |
caacaggttcaacaatgccatctttctgattatacataatagcttcatcctcttcttcgc |
3838065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 476
Target Start/End: Original strand, 33637296 - 33637534
Alignment:
| Q |
237 |
ggaatcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaa |
336 |
Q |
| |
|
|||||||||||||||||| || |||||| | | ||||||||||||||| |||||| ||| || | || | |||| || | |||| ||||||||| || |
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| T |
33637296 |
ggaatcatccaacaaaatagttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aa |
33637394 |
T |
|
| Q |
337 |
aaataaatagttgttgcattgcagcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcatcaaaaatttggttgttaggaag |
436 |
Q |
| |
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| | ||| | ||||||||| | |||||||| |||| |||||| || ||||||||||||| |||||| |||| ||||| |||||||||||| | |||| |
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| T |
33637395 |
atacaaacaattgttgcatagaagcttaatgtggaagaggacggggaaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaag |
33637494 |
T |
|
| Q |
437 |
ttcaacatattcaattctattatctctctgattatacata |
476 |
Q |
| |
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||||| || |||| ||||| ||||||| |||||||||| |
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| T |
33637495 |
ttcaatatgttcagctctatcatctctcctattatacata |
33637534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 479
Target Start/End: Original strand, 33786 - 33906
Alignment:
| Q |
359 |
agcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcatcaaaaatttggttgttaggaagttcaacatattcaattctatta |
458 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| ||||||| |||| || | |||||||||||||||||||| || | ||| || | ||| | |
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| T |
33786 |
agcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaagtcgaagaaattgaactatatca |
33885 |
T |
|
| Q |
459 |
tctctctgattatacataata |
479 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
33886 |
tctctccgattatacataata |
33906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 33596 - 33646
Alignment:
| Q |
171 |
ataaaattaaaacatcataatccaatctaaagattttgatccaacaactag |
221 |
Q |
| |
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||||||| |||||||||| |||||||| ||||| || |||||||||||||| |
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|
| T |
33596 |
ataaaatcaaaacatcatcatccaatccaaagacttcgatccaacaactag |
33646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 479
Target Start/End: Original strand, 40793935 - 40794055
Alignment:
| Q |
359 |
agcttaatttggacaaggacgaggcaaaaccaagctctgcatatgctcatgagcatcaaaaatttggttgttaggaagttcaacatattcaattctatta |
458 |
Q |
| |
|
|||||||| |||| | |||||||||||| |||||| |||||||| |||| || | ||||||| ||||||||||||| || | |||||| | ||| | |
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| T |
40793935 |
agcttaatgtggatgatgacgaggcaaaatcaagctatgcatatgttcatcggccgcctaaatttgattgttaggaagttgaagaaattcaactatatca |
40794034 |
T |
|
| Q |
459 |
tctctctgattatacataata |
479 |
Q |
| |
|
||| ||||||||||||||||| |
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| T |
40794035 |
tctatctgattatacataata |
40794055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 40793749 - 40793798
Alignment:
| Q |
171 |
ataaaattaaaacatcataatccaatctaaagattttgatccaacaacta |
220 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
40793749 |
ataaaattaaaacatcatcatccaattcaaagactttgatccaacaacta |
40793798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 13783877 - 13783937
Alignment:
| Q |
161 |
actaattgacataaaattaaaacatcataatccaatctaaagattttgatccaacaactag |
221 |
Q |
| |
|
||||||| | |||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
13783877 |
actaattaatataaaattaaaatatcatcatccaatccaaagactttgatccaacaactag |
13783937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 479
Target Start/End: Original strand, 13784146 - 13784246
Alignment:
| Q |
379 |
gaggcaaaaccaagctctgcatatgctcatgagcatcaaaaatttggttgttaggaagttcaacatattcaattctattatctctctgattatacataat |
478 |
Q |
| |
|
|||||||||||||||| |||||||| |||| || | |||||| ||||||||||| || || | |||||| | ||| ||||||| ||||||||||||| |
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| T |
13784146 |
gaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattgaagaaattcaactatatcatctctccgattatacataat |
13784245 |
T |
|
| Q |
479 |
a |
479 |
Q |
| |
|
| |
|
|
| T |
13784246 |
a |
13784246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 13784008 - 13784061
Alignment:
| Q |
240 |
atcatccaacaaaattgtaaaactagccaaggaaaacacaattaagtaaccatc |
293 |
Q |
| |
|
||||| ||||||||| || |||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
13784008 |
atcatacaacaaaatagtcaaactagctaaggaaaacacatttaaggaaccatc |
13784061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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