View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_15 (Length: 458)
Name: NF18412_low_15
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 26793164 - 26793597
Alignment:
| Q |
13 |
catcaataagattattacgtgacgtccaaatactacgtcaagagtaactaggattatgaccaagtttggaatcaagaaaggaagaatgtggaaaatacct |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26793164 |
catccataagattattacgtgacgtccaaatactacgccaagagtaactaggattatgaccaagtttggaatcaagaaaggaggaatgtggaaaatacct |
26793263 |
T |
|
| Q |
113 |
ttccttcaaagttctagctacccagctctcctatttgcacatgatattcaaaccttgtttggcaagcatggattgattaaagattctgaaatcacgaaat |
212 |
Q |
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| T |
26793264 |
ttccttcaaagttctagctacccagctctcctatttgcacatgatattcaaaccttgtttggcaagcatggcttgattaaacattctgaaatcacgaaat |
26793363 |
T |
|
| Q |
213 |
cccattccaccttgtgaatttggacatgtgagtatttcccgagccatgcaccggataacattattttgattaccacctccccaccaaaaggaattaagca |
312 |
Q |
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| T |
26793364 |
cccattccatcttgtgaatttggacatgtgagtatttcccgagccatgcaccggataacgttattttgattaccacctccccaccaaaaggaattaagca |
26793463 |
T |
|
| Q |
313 |
tcctctatataactggttccttattaagctaataatatccttctgtttcagttttgcactaacttccacctctaatcaacgtgtttgaccgtttccttcc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26793464 |
tcctctatataactggttccttattaagctaataatatccttctgtttcagttttgcactaacttccacctctaatcaacgtgtttgaccgtttccttcc |
26793563 |
T |
|
| Q |
413 |
tttccattgtctgcgcattgaacgctttcatctc |
446 |
Q |
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|||||||| ||||||||||||| ||||||||||| |
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| T |
26793564 |
tttccattttctgcgcattgaatgctttcatctc |
26793597 |
T |
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