View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18412_low_16 (Length: 453)
Name: NF18412_low_16
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 47475705 - 47476137
Alignment:
| Q |
18 |
ctgaagtattgcataatcgaaaaactacaacactcactctgttgtcggagacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47475705 |
ctgaagtattgcataatcgaaaaactacaacaatcactctgttgtcggagacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtg |
47475804 |
T |
|
| Q |
118 |
tgcatttatttgtttttattatagttaggttttcgtatctaacaaaagtgtattttttggtgtaaatacgagtgtacatagttcttttcttaattgatca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47475805 |
tgcatttatttgtttttattatagttaggttttcgtatctaacaaaagtgtattttttggtgtaaatacgagtgtacatagttcttttcttaattgatca |
47475904 |
T |
|
| Q |
218 |
gtacacaacgatagaagaagtatatggtgcattcttaattgttaggatacatggttcttctcttaattgttcagattcacaaataagaggaatactcata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47475905 |
gtacacaacgatagaagaagtatatggtgcattcttaattgttaggatacatggttcttctcttaattgttcagattcacaaataagaggaatactcata |
47476004 |
T |
|
| Q |
318 |
tttctgatattgttaggataccagttaagagcctaccaaccaagatttttatgaaaatactgattttgaaaaattgttcatattttgtcactctccagga |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
47476005 |
tttctgatactgttaggataccagttaagagcctaccatcaaagatttttatgagaatactgttttcgaaaaattgtgcatattttgtcactcaccagga |
47476104 |
T |
|
| Q |
418 |
ataggcacaacatccttgccttgttggagtacc |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47476105 |
ataggcacaacatccttgccttgttggagtacc |
47476137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 158 - 450
Target Start/End: Original strand, 24801949 - 24802241
Alignment:
| Q |
158 |
aacaaaagtgtattttttggtgtaaatacgagtgtacatagttcttttcttaattgatcagtacacaacgatagaagaagtatatggtgcattcttaatt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24801949 |
aacaaaagtgtattttttggtgtaaatacgagtgtacatagttcttttcttaattgatcagtacacaacgatagaagaagtatatggtgcattcttaatt |
24802048 |
T |
|
| Q |
258 |
gttaggatacatggttcttctcttaattgttcagattcacaaataagaggaatactcatatttctgatattgttaggataccagttaagagcctaccaac |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| | |
|
|
| T |
24802049 |
gttaggatacatggttcttctcttaattgttcagattcacaaataagaggaatactcatatttcttatactgttaggataccacttaagagcctaccatc |
24802148 |
T |
|
| Q |
358 |
caagatttttatgaaaatactgattttgaaaaattgttcatattttgtcactctccaggaataggcacaacatccttgccttgttggagtacc |
450 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24802149 |
aaagatttttatgataatactgttttcgaaaaattgtgcatattttgtcactcaccaggaataggcacaacatccttgccttgttggagtacc |
24802241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 24801836 - 24801910
Alignment:
| Q |
18 |
ctgaagtattgcataatcgaaaaactacaacactcactctgttgtcggagacgtaggaccaattaaccaaactat |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24801836 |
ctgaagtattgcataatcgaaaaactacaacaatcactctgttgtcggagacgtaggaccaattaaccaaactat |
24801910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 234
Target Start/End: Original strand, 47472466 - 47472690
Alignment:
| Q |
21 |
aagtattgcataatcgaaaaactacaacactcactctgttgtcggagacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtgtgc |
120 |
Q |
| |
|
||||||| ||||||||||||| |||| || ||||| || |||||||||||||||| ||||| |||| | || ||||||||| ||||||||||| ||||| |
|
|
| T |
47472466 |
aagtattacataatcgaaaaattacagcagtcactttgctgtcggagacgtaggaacaattgaccagattacgtgataaatcatttatgttcttctgtgc |
47472565 |
T |
|
| Q |
121 |
----atttatttgtttttattatagttaggttttcgtatctaacaaaagtgta-----ttttttggtgtaaatac--gagtgtacatagttcttttctta |
209 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| | | |||||| || || |||||||||||||| || |||||||||||||||| |||| |
|
|
| T |
47472566 |
atttatttatttgttttctttagagttaagttttcttttttaacaagtgtatacatagttttttggtgtaaagacaagagtgtacatagttctactcttg |
47472665 |
T |
|
| Q |
210 |
attgatcagtacacaacgatagaag |
234 |
Q |
| |
|
|||||||||| |||||||||||||| |
|
|
| T |
47472666 |
attgatcagtgcacaacgatagaag |
47472690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 450
Target Start/End: Original strand, 47472719 - 47472884
Alignment:
| Q |
287 |
ttcagattcacaaataagaggaatactcatatttctgatattgttaggataccagttaagag--cctaccaaccaagatttttatgaaaatactgatttt |
384 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||||||||| |||||||||||||| |||||| ||| || | ||| ||||| | |||||| ||| |
|
|
| T |
47472719 |
ttcagattaacaaataagacgaaatctcatatttctgatactgttaggataccagctaagagtagctagcatcaaaggtttttgcaataatactattttc |
47472818 |
T |
|
| Q |
385 |
g-aaaaattgttcatattttgtcactctccaggaataggcacaacatccttgccttgttggagtacc |
450 |
Q |
| |
|
| ||||| | | |||||||| ||||| || |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47472819 |
gaaaaaaatatgcatatttt-tcacttaccgggaataggcacaacatcctttccttgttggagtacc |
47472884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 401 - 448
Target Start/End: Original strand, 47485574 - 47485621
Alignment:
| Q |
401 |
tttgtcactctccaggaataggcacaacatccttgccttgttggagta |
448 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | |||||||||||||| |
|
|
| T |
47485574 |
tttgtcactcaccaggaataggcacaacatcatggccttgttggagta |
47485621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 8072883 - 8072784
Alignment:
| Q |
25 |
attgcataatcgaaaaactacaacactcactctgttgtcggagacgtaggaccaattaaccaaactatgtgataaattgtttatgttcttgtgtgcattt |
124 |
Q |
| |
|
|||||||||| ||||||||||| || |||| || ||||||| ||||||| |||||| | ||||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
8072883 |
attgcataatagaaaaactacatcagccactttgctgtcggaaacgtaggcacaattagtcgaactatgtgatcaatcatttgtgttcttgtgtgcattt |
8072784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University