View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_18 (Length: 426)
Name: NF18412_low_18
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 39727663 - 39728063
Alignment:
| Q |
18 |
ttttcaaggtatcatcattggttacactcttgtcaat-gaggatttatgtacaagcactaatgtgattatatagaataaggctggctaataattcttggt |
116 |
Q |
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| T |
39727663 |
ttttcaaggtatcatcattggttacactcttgtcaattgaggatttatgtacaagcactaatgtgattatatagaataaggctgcctaataattcttggt |
39727762 |
T |
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| Q |
117 |
aaagaattctgttcaatagttacatatatagctaaatatgtaccgagaatattctaatcctaaatgggcgccaattgcatatttacaactctcccttcaa |
216 |
Q |
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| T |
39727763 |
aaagaattctgttcaatagttacatatatagctaaatatgtaccgagaatattcta-tcctaaatgggcgccaattgcatatttacaactctcccttcaa |
39727861 |
T |
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| Q |
217 |
gcaatgtcaatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtgaaaacatttgcgaattgaagtccaaaagaccaggt |
316 |
Q |
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| T |
39727862 |
gcaatgtcaatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtgaaaacatttgcgaattgaagtccaaaagaccaggt |
39727961 |
T |
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| Q |
317 |
cactatctaatttctccttgatgaagggtcaatgtatctatatgtatttgattctatcatgcgtgttgggttacatgcattgctaatggaagaagtatta |
416 |
Q |
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| T |
39727962 |
cactatctaatttctccttgatgaagggtcaatgtatctatatgtatttgattctatcatgcgtgttgggttacatgcattgctaatggaagaagtatta |
39728061 |
T |
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| Q |
417 |
tc |
418 |
Q |
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| T |
39728062 |
tc |
39728063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 39866307 - 39866265
Alignment:
| Q |
54 |
tgaggatttatgtacaagcactaatgtgattatatagaataag |
96 |
Q |
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| T |
39866307 |
tgaggattgatgtacaagcactaatgtgattatatagaataag |
39866265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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