View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_20 (Length: 402)
Name: NF18412_low_20
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 10218617 - 10218998
Alignment:
| Q |
1 |
tttgtttgtgtggaaaaattatgtggaacagagaagaagcatatgcgttcaaattctagtggtaagagctagcattggagccaaagtgaatcacaaattc |
100 |
Q |
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| T |
10218617 |
tttgtttgtgtggaaaaattatgtggaacagagaagaagcatatgcgttcaaattctagtggtaagagctagcattggagccaaagtgaatcacaaattc |
10218716 |
T |
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| Q |
101 |
acaatttaatgtgattatatggactttttgttgatgannnnnnngtttggtaaataaaagaa---acgacaacactgttaaaaactcacatac-caaatg |
196 |
Q |
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| T |
10218717 |
acaatttaatgtgattatatggactttttgttgatgatttttttgtttggtaaataaaagaaacgacgacaacgctattaaaaactcacatacacaaatg |
10218816 |
T |
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| Q |
197 |
aaatagtcgaagttcaaatgttcatcatagcgtctgacttaataatttcggtatttattgtccatatnnnnnnnnnntagccggccacttttattctttt |
296 |
Q |
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| T |
10218817 |
aaatagtcgaagttcgaatgctcaccataatgtctgacttaacaatttcgacatttattgttcatat---aaaaaaatagccggccacttttattctttt |
10218913 |
T |
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| Q |
297 |
tattgaaatatcaatagaccgtttgtgccaattgttcttgttacaaaacttattaccagttatcattgtatcgttgcctttaaat |
381 |
Q |
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| T |
10218914 |
tattgaaatatcaatagatcgtttgtgccaattgttcttgttacaaaacttattatcagttatcattgtatcgttgcctttaaat |
10218998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 11050852 - 11050971
Alignment:
| Q |
274 |
tagccggccacttttattctttttattgaaatatcaatagaccgtttgtgccaattgttcttgttacaaaacttattaccagttatcattgtatcg-ttg |
372 |
Q |
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| T |
11050852 |
tagccggccacttttattctttttattgaaacatcaatagactctttgtgccaattgttcttgttacaaaacttattaccagttaccattgtatggtttg |
11050951 |
T |
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| Q |
373 |
cctttaaattcatgatgatg |
392 |
Q |
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|||| |||||||||||||| |
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| T |
11050952 |
tcttttaattcatgatgatg |
11050971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11050424 - 11050492
Alignment:
| Q |
1 |
tttgtttgtgtggaaaaattatgt-ggaacagagaagaagcatatgcgttcaaattctagtggtaagag |
68 |
Q |
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| T |
11050424 |
tttgtttgtgtggaaaaattatgttggaatagagaagaaacatatgcatttaaattatagtggtaagag |
11050492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 11050630 - 11050729
Alignment:
| Q |
115 |
ttatatggactttttgttgatgannnnnnngtttggtaaataaaagaaacgacaacactgttaaaaactcacatac-caaatgaaatagtcgaagttcaa |
213 |
Q |
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||||||||||||||| ||||||| ||||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||||| | ||||| |
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| T |
11050630 |
ttatatggactttttattgatgatatttttatttggtagataaaagaaac-acaaagttgttaaaaactcacatacacaaatgaaatagtcggaattcaa |
11050728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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