View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18412_low_21 (Length: 385)
Name: NF18412_low_21
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 43242688 - 43243047
Alignment:
| Q |
10 |
tcatcatcttcaactcaaactcataaatatccaaaaaact-agaaaaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaa |
108 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43242688 |
tcatcatcttcaactcaaactcataaatacccaaaaaaattagaaaaacaaattcaacgatacatattctcatatcttcatctctttattccaaatcaaa |
43242787 |
T |
|
| Q |
109 |
caaagctcaacccacaattaattcatctatatcaatcnnnnnnnnnttatatacaaacttcaaaacaaaacacataaccaataatctgatgttgtttcaa |
208 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43242788 |
caaatctcaacccacaattaattcctctatatctatcaaaaaaaaattatatacaaacttcaaaacaaaacgcataaccaataatctgatgttgtttcaa |
43242887 |
T |
|
| Q |
209 |
ccannnnnnnnctccctcaaaaacaacaacagttttcaatctaacaacaccaaccacaagtatttttccataatcatgttctaacatcaccaacacaaac |
308 |
Q |
| |
|
||| ||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43242888 |
ccatttttt--ctccctcaagaacagcaacaattttcaatctaataacaccaaccacaagtatttttccataatcatgttctaacatcaccaacacaaac |
43242985 |
T |
|
| Q |
309 |
tctgatacaaaccttcaagaacttaacaacaatcacacaattacaatttccatcaaccaaca |
370 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| |
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|
| T |
43242986 |
tctgatacaaaccttcaagaactcaacaacaatcacacaatttcgatttccatcaaccaaca |
43243047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 44890936 - 44891135
Alignment:
| Q |
10 |
tcatcatcttcaactcaaactcataaatatcc-aaaaaactagaaaaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaa |
108 |
Q |
| |
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||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
44890936 |
tcatcatcttcaactcaaactcataaaaaccccaaaaaactagaaaaacaaattcaacaatacatattctcaaatcttcatctctttattctaaatcaaa |
44891035 |
T |
|
| Q |
109 |
caaagctcaacccacaattaattcatctatatcaatcnnnnnnnnnttatatacaaacttcaaaacaaaacacataaccaataatctgatgttgtttcaa |
208 |
Q |
| |
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|||| ||||||||||||||||||| |||||||| || |||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44891036 |
caaatctcaacccacaattaattcctctatatctat--aaaaaaaactatatataaacttcaaaacaaaac-cataaccaataatctgatgttgtttcaa |
44891132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 35076832 - 35076910
Alignment:
| Q |
54 |
aaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaacaaagctcaacccacaattaattc |
132 |
Q |
| |
|
|||||| |||||||| |||| |||||||| || |||||| ||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
35076832 |
aaacaatttcaacaacacatgctctcaaatattgatctctatattccaaaataaacaaatctcaacccacaattaattc |
35076910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 220 - 370
Target Start/End: Original strand, 35780208 - 35780362
Alignment:
| Q |
220 |
ctccctcaaaaacaacaacagttttcaatctaacaacaccaaccacaagtattttt----ccataatcatgttctaacatcaccaacacaaactctgata |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
35780208 |
ctccctcaagaacaacaacagttttcaatctaacaacaccaaccacaagtatttttttttccagaatcatgttctaacatcaccaacacaaactctgata |
35780307 |
T |
|
| Q |
316 |
caaaccttcaagaacttaacaacaatcacacaattacaatttccatcaaccaaca |
370 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || | ||||||||||||||||| |
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|
| T |
35780308 |
caaaccttcaagaactcaacaacaatcacacattttcgatttccatcaaccaaca |
35780362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 220 - 370
Target Start/End: Complemental strand, 20440079 - 20439925
Alignment:
| Q |
220 |
ctccctcaaaaacaacaacagttttcaatctaacaacaccaaccacaagtattttt----ccataatcatgttctaacatcaccaacacaaactctgata |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
20440079 |
ctccctcaagaacaacaacagttttcaatctaacaacaccaaccacaagtatttttttttccagaatcatgttctaacatcaccaacacaaactctgata |
20439980 |
T |
|
| Q |
316 |
caaaccttcaagaacttaacaacaatcacacaattacaatttccatcaaccaaca |
370 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || ||||||||||||||||| |
|
|
| T |
20439979 |
caaaccttcaagaactcaacaacaatcacacatttttgatttccatcaaccaaca |
20439925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 220 - 370
Target Start/End: Complemental strand, 20445684 - 20445530
Alignment:
| Q |
220 |
ctccctcaaaaacaacaacagttttcaatctaacaacaccaaccacaagtattttt----ccataatcatgttctaacatcaccaacacaaactctgata |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
20445684 |
ctccctcaagaacaacaacagttttcaatctaacaacaccaaccacaagtatttttttttccagaatcatgttctaacatcaccaacacaaactctgata |
20445585 |
T |
|
| Q |
316 |
caaaccttcaagaacttaacaacaatcacacaattacaatttccatcaaccaaca |
370 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || ||||||||||||||||| |
|
|
| T |
20445584 |
caaaccttcaagaactcaacaacaatcacacatttttgatttccatcaaccaaca |
20445530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 18009873 - 18009757
Alignment:
| Q |
10 |
tcatcatcttcaactcaaactcataaatatccaaaaaactagaaaaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaac |
109 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18009873 |
tcatcatcttcaactcaa-ctcataaacacccaaaaaactagaaaaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaac |
18009775 |
T |
|
| Q |
110 |
aaagctcaacccacaatt |
127 |
Q |
| |
|
|| |||||||||||||| |
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|
| T |
18009774 |
caatctcaacccacaatt |
18009757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 32234261 - 32234380
Alignment:
| Q |
12 |
atcatcttcaactcaaactcataaatatccaaaaaactagaaaaacaaattcaacaatacatattctcaaatcttcatctctttattccaaatcaaacaa |
111 |
Q |
| |
|
|||||||||||||||||| ||| || | |||||||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
32234261 |
atcatcttcaactcaaacacatgaacacccaaaaaatcagaaaaacacattcaacaataaatattcttaaatcttcatctctttattccaaatcaaacaa |
32234360 |
T |
|
| Q |
112 |
agctcaacccacaattaatt |
131 |
Q |
| |
|
| |||||||||||||||||| |
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|
| T |
32234361 |
atctcaacccacaattaatt |
32234380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 32234401 - 32234438
Alignment:
| Q |
155 |
ttatatacaaacttcaaaacaaaacacataaccaataa |
192 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
32234401 |
ttatatacaaacttcaaaacaaaactcataatcaataa |
32234438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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