View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18412_low_22 (Length: 381)
Name: NF18412_low_22
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 244 - 363
Target Start/End: Original strand, 30684525 - 30684644
Alignment:
| Q |
244 |
cgatacggtggatgaagatcaattcaggttctgcggcggtgtaaatccgttggacttcgtacgtaacaatgattccagtgttcaattgtaccagaaatta |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30684525 |
cgatacggtggatgaagatcaattcaggttctgcggcggtgtaaatccgttggacttcgtacgtaacaatgattccagtgttcaattgtaccagaaatta |
30684624 |
T |
|
| Q |
344 |
gaagattaccaccagaaatc |
363 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30684625 |
gaagattaccaccagaaatc |
30684644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 30684355 - 30684465
Alignment:
| Q |
62 |
ttcaacgtcagaatggaagtgattaaccaaaaggaggatgaagatcatccgagggcgatagaagacagcgacaacgccgtcgataccgactatggcacat |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30684355 |
ttcaacgtcagaatggaagtgattaaccaaaaggaggatgaagatcatccgagggcgatagaagacagcgacaacgccgtcgataccgaatatggcacat |
30684454 |
T |
|
| Q |
162 |
tgtacggtgcc |
172 |
Q |
| |
|
||||||||||| |
|
|
| T |
30684455 |
tgtacggtgcc |
30684465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 363
Target Start/End: Original strand, 28485261 - 28485383
Alignment:
| Q |
244 |
cgatacggtggatgaagat---caattcaggttctgcggcggtgtaaatccgttggacttcgtacgtaacaatgattccagtgttcaattgtaccagaaa |
340 |
Q |
| |
|
|||||| |||||||||||| ||||| | ||| ||| |||||||||||| || |||||||| ||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
28485261 |
cgatactgtggatgaagatgatcaatttatcttcggcgccggtgtaaatcctttagacttcgttcgtaacaatgattccggtgttaatttgtaccagaaa |
28485360 |
T |
|
| Q |
341 |
ttagaagattaccaccagaaatc |
363 |
Q |
| |
|
|| |||||||||| |||||||| |
|
|
| T |
28485361 |
tttaaagattaccatcagaaatc |
28485383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 28466859 - 28466942
Alignment:
| Q |
281 |
ggtgtaaatccgttggacttcgtacgtaacaatgattccagtgttcaattgtaccagaaattagaagattaccaccagaaatct |
364 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||| |||| ||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
28466859 |
ggtgtaaatcctttggacttcgttcgtaataatgattccgatgttagattgtaccagaaatttaaagattaccatcagaaatct |
28466942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 28485103 - 28485167
Alignment:
| Q |
71 |
agaatggaagtgattaaccaaaaggaggatgaagatcatccgagggcgatagaagacagcgacaa |
135 |
Q |
| |
|
|||||||||| ||||||||| |||||||| || |||||||| |||||| |||||||||||||||| |
|
|
| T |
28485103 |
agaatggaagagattaaccagaaggaggaggaggatcatccaagggcggtagaagacagcgacaa |
28485167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University