View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18412_low_24 (Length: 374)

Name: NF18412_low_24
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18412_low_24
NF18412_low_24
[»] chr4 (14 HSPs)
chr4 (1-184)||(26474851-26475034)
chr4 (239-363)||(26475090-26475214)
chr4 (240-363)||(32057380-32057504)
chr4 (1-41)||(4305740-4305780)
chr4 (1-44)||(39041297-39041340)
chr4 (1-36)||(39421044-39421079)
chr4 (1-31)||(31050698-31050728)
chr4 (1-31)||(40813817-40813847)
chr4 (1-31)||(53756771-53756801)
chr4 (1-30)||(37707392-37707421)
chr4 (4-41)||(38929845-38929882)
chr4 (1-41)||(2061764-2061804)
chr4 (1-41)||(25753187-25753227)
chr4 (1-41)||(49747542-49747582)
[»] chr3 (20 HSPs)
chr3 (242-363)||(12220921-12221042)
chr3 (240-355)||(7424639-7424752)
chr3 (114-180)||(12220793-12220859)
chr3 (108-180)||(7424812-7424884)
chr3 (4-41)||(823461-823498)
chr3 (1-42)||(20710733-20710774)
chr3 (1-41)||(17550972-17551012)
chr3 (1-41)||(19176517-19176557)
chr3 (1-36)||(14879450-14879485)
chr3 (1-80)||(19295853-19295931)
chr3 (240-327)||(24991712-24991799)
chr3 (1-36)||(34475785-34475820)
chr3 (1-36)||(45398811-45398846)
chr3 (2-41)||(47945722-47945761)
chr3 (3-41)||(1652912-1652950)
chr3 (1-39)||(23328378-23328416)
chr3 (1-41)||(14755291-14755331)
chr3 (1-29)||(37123397-37123425)
chr3 (1-41)||(39021302-39021342)
chr3 (1-41)||(43012390-43012430)
[»] scaffold0036 (4 HSPs)
scaffold0036 (239-354)||(64001-64115)
scaffold0036 (57-180)||(64166-64290)
scaffold0036 (239-354)||(69143-69257)
scaffold0036 (57-180)||(69308-69432)
[»] chr2 (13 HSPs)
chr2 (252-354)||(8520630-8520733)
chr2 (240-293)||(37831213-37831266)
chr2 (1-41)||(16959997-16960037)
chr2 (1-41)||(22885159-22885199)
chr2 (1-36)||(10524112-10524147)
chr2 (1-36)||(14405213-14405248)
chr2 (1-31)||(1269498-1269528)
chr2 (1-31)||(4162056-4162086)
chr2 (1-42)||(9560813-9560854)
chr2 (3-31)||(10173614-10173642)
chr2 (3-31)||(23665440-23665468)
chr2 (7-111)||(37831024-37831128)
chr2 (1-41)||(39338891-39338931)
[»] chr1 (20 HSPs)
chr1 (240-354)||(2660548-2660664)
chr1 (255-354)||(8133643-8133744)
chr1 (1-41)||(46692845-46692885)
chr1 (3-36)||(27031871-27031904)
chr1 (243-353)||(30655812-30655922)
chr1 (240-353)||(46167684-46167797)
chr1 (253-296)||(15840700-15840744)
chr1 (1-45)||(15840934-15840978)
chr1 (1-41)||(19598651-19598691)
chr1 (1-41)||(31585786-31585826)
chr1 (1-41)||(41920467-41920507)
chr1 (1-36)||(5459176-5459211)
chr1 (1-36)||(7857668-7857703)
chr1 (1-36)||(46814498-46814533)
chr1 (3-45)||(30655577-30655619)
chr1 (5-41)||(5389447-5389483)
chr1 (1-41)||(17033601-17033641)
chr1 (5-41)||(27102210-27102246)
chr1 (1-45)||(33034668-33034712)
chr1 (1-41)||(38544764-38544804)
[»] scaffold0236 (2 HSPs)
scaffold0236 (16-111)||(10358-10452)
scaffold0236 (240-327)||(10139-10226)
[»] chr7 (16 HSPs)
chr7 (240-327)||(28006847-28006936)
chr7 (1-41)||(3478367-3478407)
chr7 (1-45)||(46262141-46262185)
chr7 (1-41)||(10244197-10244237)
chr7 (1-41)||(13311854-13311894)
chr7 (1-36)||(6584924-6584959)
chr7 (1-36)||(9349764-9349799)
chr7 (1-36)||(34389977-34390012)
chr7 (1-36)||(38485571-38485606)
chr7 (1-31)||(8745168-8745198)
chr7 (1-31)||(17802852-17802882)
chr7 (1-42)||(27993561-27993602)
chr7 (1-42)||(35206718-35206759)
chr7 (1-41)||(6716762-6716802)
chr7 (1-41)||(12480901-12480941)
chr7 (1-29)||(38306276-38306304)
[»] chr6 (9 HSPs)
chr6 (1-45)||(34105428-34105472)
chr6 (1-41)||(20701829-20701869)
chr6 (1-41)||(21266128-21266168)
chr6 (1-41)||(26216045-26216085)
chr6 (2-36)||(13423482-13423516)
chr6 (3-41)||(16510327-16510365)
chr6 (1-41)||(3117508-3117548)
chr6 (1-29)||(26534757-26534785)
chr6 (1-41)||(32935365-32935405)
[»] scaffold0620 (1 HSPs)
scaffold0620 (1-45)||(3845-3889)
[»] chr8 (9 HSPs)
chr8 (1-41)||(24995421-24995461)
chr8 (1-41)||(31207388-31207428)
chr8 (1-41)||(34389031-34389071)
chr8 (240-327)||(15075037-15075126)
chr8 (4-42)||(40531250-40531288)
chr8 (1-30)||(33967341-33967370)
chr8 (1-41)||(15906701-15906741)
chr8 (1-41)||(17657028-17657068)
chr8 (1-41)||(35062472-35062512)
[»] chr5 (13 HSPs)
chr5 (1-41)||(33258908-33258948)
chr5 (1-41)||(34378113-34378153)
chr5 (1-36)||(13954265-13954300)
chr5 (10-45)||(28765624-28765659)
chr5 (1-31)||(12046270-12046300)
chr5 (4-42)||(18557554-18557592)
chr5 (3-41)||(18593260-18593298)
chr5 (1-39)||(25341713-25341751)
chr5 (1-31)||(39184223-39184253)
chr5 (1-41)||(7195265-7195305)
chr5 (1-41)||(7392057-7392097)
chr5 (1-41)||(25992022-25992062)
chr5 (8-40)||(26045991-26046023)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-31)||(19398-19428)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-31)||(42174-42204)
[»] scaffold0068 (1 HSPs)
scaffold0068 (3-36)||(35802-35835)
[»] scaffold1613 (1 HSPs)
scaffold1613 (1-41)||(1043-1083)
[»] scaffold0171 (1 HSPs)
scaffold0171 (308-363)||(29185-29240)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26474851 - 26475034
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgttttggcgtgtttttgtgtcttcttctacagactgaggattgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || || |||||||||||||||    
T  26474851 tggtgggccgatcacttttgattcgagatcgagagttagtttcttgtctcaagctgttttggcgtgtttttgtgtttttttttatagactgaggattgat 26474950  T
Q  101 cggtggtggaagttgaattggttcagaatttcgactaagttggggtgatgaggtgaggtgttgtttgtggtgatgagaagacga 184  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26474951 cggtggtggaagttgaattggttcagaatttcggctaagttggggtgatgaggtgaggtgttgtttgtggtgatgagaagacga 26475034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 239 - 363
Target Start/End: Original strand, 26475090 - 26475214
Alignment:
Q  239 atgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtagg 338  Q
    |||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26475090 atgtgaatatcaggcgataggtgtttggattttgattctatggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtagg 26475189  T
Q  339 ggtttagcttggttttcgtgatgat 363  Q
    |||||||||||||||||||||||||    
T  26475190 ggtttagcttggttttcgtgatgat 26475214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 363
Target Start/End: Original strand, 32057380 - 32057504
Alignment:
Q  240 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtttagtttgtag 337  Q
    |||||||||  ||| |||| |||||| ||||| |||  || | ||||||||||||||||||||  |||| ||||||||||||||||||||| |||||| |    
T  32057380 tgtgagtagtgggcaatagttgtttgaattttattttcgttgtcattcacgatggagtgtgaggttttgcctcaacttttggtttatgttt-gtttgttg 32057478  T
Q  338 gggtttagcttggttttcgtgatgat 363  Q
    ||||||| ||| ||||| ||| ||||    
T  32057479 gggtttaacttagttttggtgttgat 32057504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4305740 - 4305780
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  4305740 tggtggggcgatcacttttgattcgagatcgggagttagtt 4305780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 39041340 - 39041297
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtttct 44  Q
    ||||||||||||||||||||||||||||||  |||| |||||||    
T  39041340 tggtgggccgatcacttttgattcgagatcaggagtcagtttct 39041297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39421079 - 39421044
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  39421079 tggtgggccgatcacttttgattcgagatcgggagt 39421044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 31050728 - 31050698
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  31050728 tggtgggccgatcacttttgattcgagatcg 31050698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 40813847 - 40813817
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  40813847 tggtgggccgatcacttttgattcgagatcg 40813817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 53756771 - 53756801
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  53756771 tggtgggccgatcacttttgattcgagatcg 53756801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 37707421 - 37707392
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatc 30  Q
    ||||||||||||||||||||||||||||||    
T  37707421 tggtgggccgatcacttttgattcgagatc 37707392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 38929845 - 38929882
Alignment:
Q  4 tgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  38929845 tgggccgatcacttttgattcgagatcaagagtcagtt 38929882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2061804 - 2061764
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    |||||||| |||||||||||||||||||| |||||| ||||    
T  2061804 tggtgggctgatcacttttgattcgagattgagagtcagtt 2061764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25753187 - 25753227
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||| ||||||||||||||||||||||| |||| ||||    
T  25753187 tggtggggcgatcacttttgattcgagatcgggagtcagtt 25753227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 49747542 - 49747582
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||| ||||||||||||||||| |||||||||||| ||||    
T  49747542 tggtgagccgatcacttttgatttgagatcgagagtcagtt 49747582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 242 - 363
Target Start/End: Original strand, 12220921 - 12221042
Alignment:
Q  242 tgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtaggggt 341  Q
    |||||||||| ||||| ||||||||||||||||| ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  12220921 tgagtagcagacgatatgtgtttggattttgtttttgtggtcattcaagatggattgtgagcttgactcaacttttggtttatgtttagtttgtaggggt 12221020  T
Q  342 ttagcttggttttcgtgatgat 363  Q
    ||||||||||||| ||| ||||    
T  12221021 ttagcttggttttggtgttgat 12221042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 240 - 355
Target Start/End: Complemental strand, 7424752 - 7424639
Alignment:
Q  240 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtaggg 339  Q
    |||||||||||| |||||||||||||||||| |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||    
T  7424752 tgtgagtagcagacgataggtgtttggattt-gtttttgtggtcattcactatggagtgtgagcttgactcaacttttggtttatgattagtttgta-gg 7424655  T
Q  340 gtttagcttggttttc 355  Q
    ||||||||||||||||    
T  7424654 gtttagcttggttttc 7424639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 12220793 - 12220859
Alignment:
Q  114 tgaattggttcagaatttcgactaagttggggtgatgaggtgaggtgttgtttgtggtgatgagaag 180  Q
    ||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  12220793 tgaattggttcggagtttcggctaagttgtggtgatgaggtgaggtgttgtttgtggtgatgagaag 12220859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 7424884 - 7424812
Alignment:
Q  108 ggaagttgaattggttcagaatttcgactaagttggggtgatgaggtgaggtgttgtttgtggtgatgagaag 180  Q
    ||||| ||| ||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||    
T  7424884 ggaagctgatttggttcggaatttcggctaagttgtggtgatgatgtgaggtgttgtttgtggtgatgagaag 7424812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 823498 - 823461
Alignment:
Q  4 tgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  823498 tgggccgatcacttttgattcgagatcgagagtcagtt 823461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20710774 - 20710733
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagttt 42  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  20710774 tggtgggccgatcacttttgattcgagatcgggagctagttt 20710733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17550972 - 17551012
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  17550972 tggtgggccgatcacttttgattcgagatcgggagtcagtt 17551012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19176517 - 19176557
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  19176517 tggtgggccgatcacttttgattcgagatcgggagtcagtt 19176557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14879450 - 14879485
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14879450 tggtgggccgatcacttttgattcgagatcgggagt 14879485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 19295931 - 19295853
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgttttggcgtgtttttgtgtcttct 80  Q
    ||||||||| |||||||||||||||| ||||  ||||||||||||  |||||| | ||| ||| |||||| |||||||||    
T  19295931 tggtgggcctatcacttttgattcgatatcggaagttagtttcttgactcaag-tttttgggcttgttttggtgtcttct 19295853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 24991799 - 24991712
Alignment:
Q  240 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtt 327  Q
    |||||| ||| | |||||||| |||||||||||||| |||| ||||||||| ||||| ||||  ||    ||||||||||||||||||    
T  24991799 tgtgagaagcggacgataggtatttggattttgtttttgtgcccattcacgttggagggtgatgttttggcaacttttggtttatgtt 24991712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34475820 - 34475785
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  34475820 tggtgggccgatcacttttgattcgagatcgggagt 34475785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45398811 - 45398846
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  45398811 tggtggaccgatcacttttgattcgagatcgagagt 45398846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 47945722 - 47945761
Alignment:
Q  2 ggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  47945722 ggtgggccgatcacttttgattcgagatcgggagtcagtt 47945761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 1652950 - 1652912
Alignment:
Q  3 gtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  1652950 gtgggccgatcacttttgattcgagatcaggagttagtt 1652912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23328416 - 23328378
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttag 39  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  23328416 tggtggaccgatcacttttgattcgagatcgggagttag 23328378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14755331 - 14755291
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    |||||||||||||||||||||||| |||||| |||| ||||    
T  14755331 tggtgggccgatcacttttgattcaagatcgggagtcagtt 14755291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37123397 - 37123425
Alignment:
Q  1 tggtgggccgatcacttttgattcgagat 29  Q
    |||||||||||||||||||||||||||||    
T  37123397 tggtgggccgatcacttttgattcgagat 37123425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39021342 - 39021302
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||| ||| |||| ||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagtt 39021302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43012390 - 43012430
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    |||||| |||||||||||||||||||||||| |||| ||||    
T  43012390 tggtggcccgatcacttttgattcgagatcgggagtcagtt 43012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 64115 - 64001
Alignment:
Q  239 atgtgagtagcag-gcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtag 337  Q
    ||||||||||| | |||||||| ||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||| || |||| ||     
T  64115 atgtgagtagccgcgcgataggcgtttggattttgtttctgtggtcattcgcgatggagtgtgtgcttgactcaacttttggtttatg-ttggtttata- 64018  T
Q  338 gggtttagcttggtttt 354  Q
    |||||||||||||||||    
T  64017 gggtttagcttggtttt 64001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 64290 - 64166
Alignment:
Q  57 ttttggcgtgtttttgtgtcttcttctacagactgaggattgatcggtggtggaagttgaattggttcagaatttcgactaagttggggtgatgaggtga 156  Q
    |||| |||| |||| | ||||||| | ||||||||||||||||||||||||||||  |||||| |||| ||| |||| ||| |||| |||||||||||||    
T  64290 tttttgcgtattttggcgtcttctccgacagactgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggtgatgaggtga 64191  T
Q  157 ggtgt-tgtttgtggtgatgagaag 180  Q
    ||||| |||||||||||||||||||    
T  64190 ggtgtctgtttgtggtgatgagaag 64166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 69257 - 69143
Alignment:
Q  239 atgtgagtagcag-gcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtag 337  Q
    ||||||||||| | |||||||| ||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||| || |||| ||     
T  69257 atgtgagtagccgcgcgataggcgtttggattttgtttctgtggtcattcgcgatggagtgtgtgcttgactcaacttttggtttatg-ttggtttata- 69160  T
Q  338 gggtttagcttggtttt 354  Q
    |||||||||||||||||    
T  69159 gggtttagcttggtttt 69143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 69432 - 69308
Alignment:
Q  57 ttttggcgtgtttttgtgtcttcttctacagactgaggattgatcggtggtggaagttgaattggttcagaatttcgactaagttggggtgatgaggtga 156  Q
    |||| |||| |||| | ||||||| | ||||||||||||||||||||||||||||  |||||| |||| ||| |||| ||| |||| |||||||||||||    
T  69432 tttttgcgtattttggcgtcttctccgacagactgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggtgatgaggtga 69333  T
Q  157 ggtgt-tgtttgtggtgatgagaag 180  Q
    ||||| |||||||||||||||||||    
T  69332 ggtgtctgtttgtggtgatgagaag 69308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 8520630 - 8520733
Alignment:
Q  252 gcgataggtgtttggattttgtttctgtggccattcacgatggagtg-tgag-tttgactcaacttttggtttatgtttagtttgtaggggtttagcttg 349  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||| |||  |||||||||| ||||||||| | ||||  |||||||||||||    
T  8520630 gcgataggtgtttggattttgtttatgtggccattcacgatggagggatgagtttttgctcaacttttagtttatgttga-tttgagggggtttagcttg 8520728  T
Q  350 gtttt 354  Q
    |||||    
T  8520729 gtttt 8520733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 37831213 - 37831266
Alignment:
Q  240 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatg 293  Q
    ||||||||||||||||||||||| | |||||||||  ||||||||||| |||||    
T  37831213 tgtgagtagcaggcgataggtgtgtagattttgttcttgtggccattcgcgatg 37831266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16959997 - 16960037
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  16959997 tggtgggccgatcgcttttgattcgagatcgagagtcagtt 16960037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22885199 - 22885159
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  22885199 tggtgggccgatcacttttgattcgagatcgggagtcagtt 22885159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 10524112 - 10524147
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10524112 tggtgggccgatcacttttgattcgagatcgggagt 10524147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14405213 - 14405248
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14405213 tggtgggccgatcacttttgattcgagatcgggagt 14405248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 1269498 - 1269528
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  1269498 tggtgggccgatcacttttgattcgagatcg 1269528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 4162086 - 4162056
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  4162086 tggtgggccgatcacttttgattcgagatcg 4162056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9560854 - 9560813
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagttt 42  Q
    |||||| |||||||||||||||||||||||| ||| ||||||    
T  9560854 tggtggaccgatcacttttgattcgagatcgggagctagttt 9560813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 10173642 - 10173614
Alignment:
Q  3 gtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||    
T  10173642 gtgggccgatcacttttgattcgagatcg 10173614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 23665468 - 23665440
Alignment:
Q  3 gtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||    
T  23665468 gtgggccgatcacttttgattcgagatcg 23665440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 37831024 - 37831128
Alignment:
Q  7 gccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgttttggcgtgtttttgtgtcttcttctacagactgaggattgatcggtgg 106  Q
    |||||||||||||||||||| |||   ||| ||||||||  |||||| | ||||| | | |||| ||||||||| | ||  || |||||||||| |||||    
T  37831024 gccgatcacttttgattcgaaatctgaagtcagtttcttgactcaagtttttttgccatattttggtgtcttctacgacgaaccgaggattgattggtgg 37831123  T
Q  107 tggaa 111  Q
    |||||    
T  37831124 tggaa 37831128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39338931 - 39338891
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||| ||||||||||||||||| |||| ||||    
T  39338931 tggtgggccgatcgcttttgattcgagatcgggagtcagtt 39338891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 354
Target Start/End: Complemental strand, 2660664 - 2660548
Alignment:
Q  240 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtg--agtttgactcaacttttggtttatgtttagtttgtag 337  Q
    ||||||||| ||| |||  ||||||||||||||||| ||||||| ||||| ||||||||||  | |||| | ||||||||||||||||||   ||||| |    
T  2660664 tgtgagtagtaggtgatgagtgtttggattttgtttatgtggcccttcacaatggagtgtgaaattttggcgcaacttttggtttatgttggttttgtgg 2660565  T
Q  338 gggtttagcttggtttt 354  Q
    ||| |||||||| ||||    
T  2660564 gggattagcttgatttt 2660548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 354
Target Start/End: Original strand, 8133643 - 8133744
Alignment:
Q  255 ataggtgtttggattttgtttctgtggccattcacgatggag-tgtgag--tttgactcaacttttggtttatgtttagtttgtaggggtttagcttggt 351  Q
    ||||||||||| ||||||||| |||||||||||| |||| || ||||||  |||| |||||||||||||||||| || |||||| |||| ||| ||||||    
T  8133643 ataggtgtttgaattttgtttttgtggccattcatgatgaagttgtgaggttttggctcaacttttggtttatg-ttggtttgtgggggcttaacttggt 8133741  T
Q  352 ttt 354  Q
    |||    
T  8133742 ttt 8133744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46692885 - 46692845
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  46692885 tggtgggccgatcacttttgattcgagatcgggagttagtt 46692845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 27031904 - 27031871
Alignment:
Q  3 gtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||||||    
T  27031904 gtgggccgatcacttttgattcgagatcgagagt 27031871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 30655812 - 30655922
Alignment:
Q  243 gagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtttagtttgtagggg 340  Q
    |||||||| ||||||||||| |||||||||||||  ||||||||| | |||||  |||||  |||| |||||||| | |  |||||| | ||||||||||    
T  30655812 gagtagcaagcgataggtgtatggattttgtttccatggccattcccaatggacggtgaggttttggctcaacttct-gactatgttga-tttgtagggg 30655909  T
Q  341 tttagcttggttt 353  Q
    |||||||||||||    
T  30655910 tttagcttggttt 30655922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 46167684 - 46167797
Alignment:
Q  240 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtttagtttgtag 337  Q
    |||||| || || |||||||||||||  ||||||||  |||| |||| |||||||||||| ||  ||||| |||||||||||||||||||   ||||| |    
T  46167684 tgtgagaagtagtcgataggtgtttgatttttgttt--gtggtcatttacgatggagtgtaaggttttgaatcaacttttggtttatgttggttttgtgg 46167781  T
Q  338 gggtttagcttggttt 353  Q
    | ||||| ||||||||    
T  46167782 gtgtttatcttggttt 46167797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 15840744 - 15840700
Alignment:
Q  253 cgataggtgtttggattttgttt-ctgtggccattcacgatggag 296  Q
    |||||| |||||||||||||||| |||||||||||||||||||||    
T  15840744 cgatagatgtttggattttgttttctgtggccattcacgatggag 15840700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15840978 - 15840934
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtttctt 45  Q
    |||||||| |||||||||||||||||||||| |||| ||||||||    
T  15840978 tggtgggctgatcacttttgattcgagatcgggagtcagtttctt 15840934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19598651 - 19598691
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  19598651 tggtgggccgatcgcttttgattcgagatcgagagtcagtt 19598691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31585826 - 31585786
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  31585826 tggtgggccgatcacttttgattcgagatcgggagtcagtt 31585786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41920467 - 41920507
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  41920467 tggtgggccgatcacttttgattcgagatcgggagtcagtt 41920507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5459176 - 5459211
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5459176 tggtgggccgatcacttttgattcgagatcgggagt 5459211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7857668 - 7857703
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7857668 tggtgggccgatcacttttgattcgagatcgggagt 7857703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 46814533 - 46814498
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  46814533 tggtgggccgatcacttttgattcgagatcgggagt 46814498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 30655577 - 30655619
Alignment:
Q  3 gtgggccgatcacttttgattcgagatcgagagttagtttctt 45  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||    
T  30655577 gtgggccgatcgcttttgattcgagatcgggagtcagtttctt 30655619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 5389483 - 5389447
Alignment:
Q  5 gggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  5389483 gggccgatcacttttgattcgagatcgggagtcagtt 5389447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17033601 - 17033641
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||| ||||||||| |||| ||||    
T  17033601 tggtgggccgatcacttttgaatcgagatcgggagtcagtt 17033641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 27102210 - 27102246
Alignment:
Q  5 gggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  27102210 gggccgatcacttttgattcgagatcgggagtcagtt 27102246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33034712 - 33034668
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtttctt 45  Q
    ||||||| ||||||||| |||||||||||||| ||| ||||||||    
T  33034712 tggtgggtcgatcacttctgattcgagatcgaaagtcagtttctt 33034668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38544804 - 38544764
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||| ||||||||||||||||| |||| ||||    
T  38544804 tggtgggccgatcgcttttgattcgagatcgggagtcagtt 38544764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 10452 - 10358
Alignment:
Q  16 ttttgattcgagatcgagagttagtttcttatctcaagctgttttggcgtgtttttgtgtcttcttctacagactgaggattgatcggtggtggaa 111  Q
    ||||||||||||||||||||| ||||||||  |||||| || |||||| |||||| |||||||||   ||| || |||||||||| ||||||||||    
T  10452 ttttgattcgagatcgagagtcagtttcttgactcaagttg-tttggcttgttttggtgtcttctctaacaaaccgaggattgattggtggtggaa 10358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 10226 - 10139
Alignment:
Q  240 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtt 327  Q
    |||||||||  ||||| || |||||||||||||||| |||| ||||||||| | | ||| || |||  ||||||||||| ||||||||    
T  10226 tgtgagtagtgggcgacagatgtttggattttgtttatgtgcccattcacggttgggtgagattttagctcaacttttgatttatgtt 10139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 28006847 - 28006936
Alignment:
Q  240 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtt 327  Q
    |||||||||| || |||||||||||| ||||||||| |||||||||||| || ||||||| ||  |||| ||||  ||||||||||||||    
T  28006847 tgtgagtagcgggtgataggtgtttgaattttgtttatgtggccattcatgagggagtgtaaggttttggctcacattttggtttatgtt 28006936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3478367 - 3478407
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  3478367 tggtgggccgatcacttttgattcgagatcgggagttagtt 3478407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46262185 - 46262141
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtttctt 45  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||    
T  46262185 tggtgggccgatcacttttgattcgagatcgggagctagtttctt 46262141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10244197 - 10244237
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  10244197 tggtgggccgatcacttttgattcgagatcgggagtcagtt 10244237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13311854 - 13311894
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  13311854 tggtgggccgatcacttttgattcgagatcgggagtcagtt 13311894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6584924 - 6584959
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  6584924 tggtgggccgatcacttttgattcgagatcgggagt 6584959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9349764 - 9349799
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9349764 tggtgggccgatcacttttgattcgagatcgggagt 9349799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34389977 - 34390012
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  34389977 tggtgggccgatcacttttgattcgagatcgggagt 34390012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38485571 - 38485606
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  38485571 tggtgggccgatcacttttgattcgagatcgggagt 38485606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8745168 - 8745198
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  8745168 tggtgggccgatcacttttgattcgagatcg 8745198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 17802882 - 17802852
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  17802882 tggtgggccgatcacttttgattcgagatcg 17802852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27993602 - 27993561
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagttt 42  Q
    |||||| |||||||||||||||||||||||| ||| ||||||    
T  27993602 tggtggaccgatcacttttgattcgagatcgggagctagttt 27993561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35206759 - 35206718
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagttt 42  Q
    |||||||||||||||||||||| |||||||| ||| ||||||    
T  35206759 tggtgggccgatcacttttgatccgagatcgggagctagttt 35206718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6716802 - 6716762
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    |||| |||||||||||||||||||||||||| |||| ||||    
T  6716802 tggttggccgatcacttttgattcgagatcgggagtcagtt 6716762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12480901 - 12480941
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||| ||||||||||||||||| |||| ||||    
T  12480901 tggtgggccgatcgcttttgattcgagatcgggagtcagtt 12480941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38306276 - 38306304
Alignment:
Q  1 tggtgggccgatcacttttgattcgagat 29  Q
    |||||||||||||||||||||||||||||    
T  38306276 tggtgggccgatcacttttgattcgagat 38306304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34105428 - 34105472
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtttctt 45  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||    
T  34105428 tggtgggccgatcacttttgattcgagatcgggagtcagtttctt 34105472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20701869 - 20701829
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  20701869 tggtgtgccgatcacttttgattcgagatcgggagttagtt 20701829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21266128 - 21266168
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  21266128 tggtgggccgatcgcttttgattcgagatcgggagttagtt 21266168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26216085 - 26216045
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  26216085 tggtgggccgatcacttttgattcgagatcgggagtcagtt 26216045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 13423482 - 13423516
Alignment:
Q  2 ggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||| |||||||||||||||||||||||||||||    
T  13423482 ggtggaccgatcacttttgattcgagatcgagagt 13423516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 16510365 - 16510327
Alignment:
Q  3 gtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  16510365 gtgggccgatcacttttgattcgagattgagagtcagtt 16510327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3117508 - 3117548
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    |||||||||||||||||||||||| |||||| |||| ||||    
T  3117508 tggtgggccgatcacttttgattcaagatcgggagtcagtt 3117548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26534785 - 26534757
Alignment:
Q  1 tggtgggccgatcacttttgattcgagat 29  Q
    |||||||||||||||||||||||||||||    
T  26534785 tggtgggccgatcacttttgattcgagat 26534757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32935405 - 32935365
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||| ||||||||||||||||| |||| ||||    
T  32935405 tggtgggccgatcgcttttgattcgagatcgggagtcagtt 32935365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3845 - 3889
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtttctt 45  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||    
T  3845 tggtgggccgatcaattttgattcgagatcgggagtcagtttctt 3889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24995461 - 24995421
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  24995461 tggtgggccgatcacttttgattcgagatcgggagtcagtt 24995421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31207428 - 31207388
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  31207428 tggtgggccgatcacttttgattcgagatcgggagtcagtt 31207388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34389071 - 34389031
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  34389071 tggtgggccgatcacttttgattcgagatcaagagtcagtt 34389031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 15075126 - 15075037
Alignment:
Q  240 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtt 327  Q
    |||||||||| | |||||| |||||| ||||||||| |||||  ||| ||||| |||||| ||  |||| || |||||||||||||||||    
T  15075126 tgtgagtagcggacgatagctgtttgaattttgtttatgtggttatttacgatagagtgtaaggttttggctgaacttttggtttatgtt 15075037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 40531250 - 40531288
Alignment:
Q  4 tgggccgatcacttttgattcgagatcgagagttagttt 42  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  40531250 tgggccgatcacttttgattcgagatcgggagctagttt 40531288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 33967341 - 33967370
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatc 30  Q
    ||||||||||||||||||||||||||||||    
T  33967341 tggtgggccgatcacttttgattcgagatc 33967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15906701 - 15906741
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||| ||||||||||||||| |||| ||||    
T  15906701 tggtgggccgatcacatttgattcgagatcgggagtcagtt 15906741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17657068 - 17657028
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||| ||||||||||||||||||||||| |||| ||||    
T  17657068 tggtgggtcgatcacttttgattcgagatcgggagtcagtt 17657028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35062472 - 35062512
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    |||||||||||||  ||||||||||||||||||||| ||||    
T  35062472 tggtgggccgatcgattttgattcgagatcgagagtcagtt 35062512  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33258948 - 33258908
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  33258948 tggtgggccgatcacttttgattcgagatcaggagttagtt 33258908  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34378113 - 34378153
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  34378113 tggtgggccgatcacttttgattcgagatcgggagtcagtt 34378153  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13954300 - 13954265
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  13954300 tggtgggccgatcacttttgattcgagatcgggagt 13954265  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 28765659 - 28765624
Alignment:
Q  10 gatcacttttgattcgagatcgagagttagtttctt 45  Q
    ||||||||||||||||||||||||||| ||||||||    
T  28765659 gatcacttttgattcgagatcgagagtcagtttctt 28765624  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 12046270 - 12046300
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  12046270 tggtgggccgatcacttttgattcgagatcg 12046300  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 18557554 - 18557592
Alignment:
Q  4 tgggccgatcacttttgattcgagatcgagagttagttt 42  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  18557554 tgggccgatcacttttgattcgagatccagagctagttt 18557592  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 18593260 - 18593298
Alignment:
Q  3 gtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  18593260 gtgggcagatcacttttgattcgagatcgggagttagtt 18593298  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25341713 - 25341751
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttag 39  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  25341713 tggtgggccgatcacttttgatttgagattgagagttag 25341751  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 39184253 - 39184223
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  39184253 tggtgggccgatcacttttgattcgagatcg 39184223  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7195305 - 7195265
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||| ||||||||||||||||||||||||| |||| ||||    
T  7195305 tggtgagccgatcacttttgattcgagatcgggagtcagtt 7195265  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7392097 - 7392057
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    |||||| |||||||||||||||||||||||| |||| ||||    
T  7392097 tggtggaccgatcacttttgattcgagatcgggagtcagtt 7392057  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25992022 - 25992062
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||| ||| |||||||||||||||||||||| ||||    
T  25992022 tggtgggccaatcgcttttgattcgagatcgagagtcagtt 25992062  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 26046023 - 26045991
Alignment:
Q  8 ccgatcacttttgattcgagatcgagagttagt 40  Q
    |||||||||||||||||||||||| ||||||||    
T  26046023 ccgatcacttttgattcgagatcgggagttagt 26045991  T

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Target: scaffold0200 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 19398 - 19428
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  19398 tggtgggccgatcacttttgattcgagatcg 19428  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 42204 - 42174
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcg 31  Q
    |||||||||||||||||||||||||||||||    
T  42204 tggtgggccgatcacttttgattcgagatcg 42174  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 35835 - 35802
Alignment:
Q  3 gtgggccgatcacttttgattcgagatcgagagt 36  Q
    ||||||||||||||||||||||||||||| ||||    
T  35835 gtgggccgatcacttttgattcgagatcgggagt 35802  T

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Target: scaffold1613 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1083 - 1043
Alignment:
Q  1 tggtgggccgatcacttttgattcgagatcgagagttagtt 41  Q
    ||||||||||||| ||||||||||||||||| |||| ||||    
T  1083 tggtgggccgatcgcttttgattcgagatcgggagtcagtt 1043  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 29185 - 29240
Alignment:
Q  308 ctcaacttttggtttatgtttagtttgt-aggggtttagcttggttttcgtgatgat 363  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||| ||| ||||    
T  29185 ctcaacttttggtttatg-ttagtttgtggggggtttagcttggttttggtgttgat 29240  T

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