View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_25 (Length: 369)
Name: NF18412_low_25
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 5223914 - 5223581
Alignment:
| Q |
19 |
tgtgggtttaagataaatgatagtggtcaccaatattcgaagagaggtaccatattttagtcctttagtaataaaaatcaggacaatttatagtgggttt |
118 |
Q |
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| T |
5223914 |
tgtgggtttaagataaatgatagtggtcaccaatattcgaagagaggtaccatattttagtcctttagtaataaaaatcaggacaatttatagtgtgttt |
5223815 |
T |
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| Q |
119 |
gaaacagcggtggatttt-ccacaaacgcacgtttagttaaatcctataatttttcgtttctttaaactctggttgaacttgtatagagactcaagaata |
217 |
Q |
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| T |
5223814 |
gaaacagcggtggatttttccacaaacgcacgtctagttaaattctataattttttgtttctttaaactcctgttgaatttgcatagagactcaagaata |
5223715 |
T |
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| Q |
218 |
tatcattgaacgtcaatccaaacacttcattgcatcggtgtctagtggaaccaccatcagaaaattgaaaattccgtccatcattaataataatcnnnnn |
317 |
Q |
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| T |
5223714 |
tatcattgaacgtcaatccaaacacttcattgcatcggtgtctagttgaaccaccatcaaaaagttgaaaattccgtccgtcattaataataatc-aaaa |
5223616 |
T |
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| Q |
318 |
nnttgataatctgctctaacaaatatcgtgtgttt |
352 |
Q |
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| T |
5223615 |
aattgataatctgctctaacaaatatcgtgtgttt |
5223581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 243
Target Start/End: Original strand, 29430633 - 29430761
Alignment:
| Q |
115 |
gtttgaaacagcggtggattttccacaaacgcacgtttagttaaatcctataatttttcgtttctttaaactctggttgaacttgtatagagactcaaga |
214 |
Q |
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| T |
29430633 |
gtttggaacagccgtggatttttcacaaacgcacgtttaatcagatcctacaatttttggcttcattaaattcacgttgaacttgcatagggacacaaga |
29430732 |
T |
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| Q |
215 |
atatatcattgaacgtcaatccaaacact |
243 |
Q |
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| T |
29430733 |
atatatcgcgaaacgccaatccaaacact |
29430761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 6392811 - 6392880
Alignment:
| Q |
115 |
gtttgaaacagcggtggattttccacaaacgcacgtttagttaaatcctataatttttcgtttctttaaa |
184 |
Q |
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||||| |||| ||||||||||||||||||||| ||| ||| | |||||| ||||||| | ||||||||| |
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| T |
6392811 |
gtttggaacaacggtggattttccacaaacgcgcgtctagctcgatcctacaatttttggcttctttaaa |
6392880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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