View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18412_low_26 (Length: 360)
Name: NF18412_low_26
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 32617925 - 32618171
Alignment:
| Q |
11 |
gatgaaggcgacgaagcctgaatgaagagaagaagatgtcattgaggcattgaagaggagaaaatacaatgtcatagacgcaccattttattatattaat |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32617925 |
gatgaaggcgacgaagcctggatgaagagaagaagatgtcattgacgcattgaagaggagaaaatacaatgtcatagacgcaccattttattatattaat |
32618024 |
T |
|
| Q |
111 |
tcttaaaatatctttgcaagttacaatgatggaatgtgattagataaatgtatacatatttgttagattaataaattatttgaaaaccttcacctaattt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32618025 |
tcttaaaatatctttgcaagttacaatgatggaatgtgattagataaatgtatacatatttgttagatt-ggaaattatttgaaaaccttcacctaattt |
32618123 |
T |
|
| Q |
211 |
c-aatcaaaagtcttgcaattgtgtatatgagtttccaacggttttga |
257 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32618124 |
caaatcgaaagtcttgcaattgtgtatatgagtttccaacggttttga |
32618171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 32618161 - 32618234
Alignment:
| Q |
274 |
aacggttttgaaattttgttcacaaacttaaagaaaatactattcacatttatttattttggtatatagttatt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32618161 |
aacggttttgaaattttgttcacaaacttaaagaaaatactatacacatttatttattttggtatatagttatt |
32618234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University