View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_27 (Length: 355)
Name: NF18412_low_27
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 16806585 - 16806247
Alignment:
| Q |
15 |
atcacgattcgaaataaggaaaaatgtagagatgacatgcaaaatcacatgacgatatgtctagaccta---------------------attcttgtgc |
93 |
Q |
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| T |
16806585 |
atcacaattcgaaataaggaaaaatgtagagatgacatgcaaaatcacatgacgatatgtctagacctaggaaaatataagataacgttcattcttgtgc |
16806486 |
T |
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| Q |
94 |
atgtaaacagaatataagataaagatagaaaactgaaacaaacactaattaattgctacagttgtnnnnnnntgacgataaatatagaatatgtgacata |
193 |
Q |
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| T |
16806485 |
atgtaaacagaatata-gataaagatagaaaactgaaacacacactaattaattgctacagtcgtaaaaaaatgacgataaatatagaatatgtgacata |
16806387 |
T |
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| Q |
194 |
ttctttgatatattcatctcatatggtccaaaagatatttagccaatataaactcgaccaattctccttcnnnnnnntaaaatccgaccaattctgtgaa |
293 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16806386 |
ttctttgacatattcatctcatatggtccaaaagatatttagccaatataaactcgaccaattctccttcaaaaaaataaaatccgaccaattctgtgaa |
16806287 |
T |
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| Q |
294 |
tgaaaacatatatacgtaaagttctaacaaccaactatta |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
16806286 |
tgaaaacatatatacgtaaagttctaacaaccaactatta |
16806247 |
T |
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