View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18412_low_28 (Length: 339)

Name: NF18412_low_28
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18412_low_28
NF18412_low_28
[»] chr4 (3 HSPs)
chr4 (13-323)||(42901487-42901799)
chr4 (236-323)||(46529044-46529130)
chr4 (229-323)||(52810746-52810842)
[»] chr5 (4 HSPs)
chr5 (231-323)||(946780-946872)
chr5 (231-323)||(30329952-30330044)
chr5 (232-323)||(33040362-33040452)
chr5 (231-295)||(83959-84022)
[»] chr6 (2 HSPs)
chr6 (231-321)||(16193912-16194001)
chr6 (231-317)||(25184119-25184203)
[»] chr7 (5 HSPs)
chr7 (231-295)||(36495782-36495846)
chr7 (231-284)||(33909253-33909306)
chr7 (231-285)||(19843599-19843653)
chr7 (231-323)||(36270591-36270685)
chr7 (231-323)||(37756060-37756153)
[»] chr2 (5 HSPs)
chr2 (231-323)||(10861955-10862046)
chr2 (231-323)||(11349915-11350005)
chr2 (235-295)||(11350336-11350395)
chr2 (231-323)||(15962056-15962145)
chr2 (231-295)||(28193499-28193563)
[»] chr3 (6 HSPs)
chr3 (18-111)||(17543760-17543851)
chr3 (231-323)||(10450546-10450636)
chr3 (231-295)||(40770060-40770123)
chr3 (231-295)||(16051456-16051523)
chr3 (231-295)||(16060806-16060873)
chr3 (231-322)||(48511535-48511627)
[»] chr1 (3 HSPs)
chr1 (231-323)||(45858771-45858862)
chr1 (102-131)||(40376997-40377026)
chr1 (250-282)||(31411505-31411537)
[»] scaffold0785 (1 HSPs)
scaffold0785 (231-286)||(3053-3108)
[»] scaffold0012 (1 HSPs)
scaffold0012 (248-323)||(165693-165767)
[»] chr8 (2 HSPs)
chr8 (233-323)||(8605381-8605473)
chr8 (231-323)||(38287858-38287952)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 42901487 - 42901799
Alignment:
13 cacagacatacttaacttctacacttgcttaattcttatttctctagtttcattccttcaccgcagacacatatacacaacttctcttgataataataat 112  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
42901487 cacagacatacttagcttctacacctgcttaattcttatttctctagtttcattccttcaccgcagacacatatacacagcttctcttgataataataat 42901586  T
113 aa---gggtcttgttaacgagttatgctgaatttccaaggatgaaagagcatagagaaccatttgttgaatcatttcagaccgtgaagtgtcaccattga 209  Q
    ||   |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
42901587 aataagggtcttgttaacgagttatgctgaattcccaaggatgaa-gagcatagagaaccatttgttgaatcatttcagaccgtgaagtgttaccattga 42901685  T
210 ctgcactactaatggaagatgcatggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtg 309  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
42901686 ctacactactaatggaagatgcatggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccgggcagaagcg 42901785  T
310 tgagggggtgtgtt 323  Q
    ||||||||||||||    
42901786 tgagggggtgtgtt 42901799  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 46529130 - 46529044
Alignment:
236 tatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    |||||| | |||| |||||||||||||||||||||||||||| |||||||| || ||||| |||| | |||| | |||||||||||||    
46529130 tatcagagcctatcgggtccatcgttgggcttgcatcgtccacgcttcaggcccattggg-ccgggctgaagcgcgagggggtgtgtt 46529044  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 52810842 - 52810746
Alignment:
229 tgcatggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||||| | |||| ||||||||||||||||||    ||||||||| |||||||| || ||||| |||| | |||| |||||||||||||||    
52810842 tgcatggtatcagagcctatcgggtccatcgttgggcttccgacatcgtccacgcttcaggcccattggg-ccgggctgaagcgtgagggggtgtgtt 52810746  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 323
Target Start/End: Original strand, 946780 - 946872
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||| ||||||||  |||||||||||| | ||||  ||||||||||||||    
946780 catggtatcagagcctatcgggtccatcgttgggcttgcatcgtccacgcttcaggctcgttgggaccgggctgaagcatgagggggtgtgtt 946872  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 231 - 323
Target Start/End: Original strand, 30329952 - 30330044
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||  | |||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    ||||||||||||||||||||    
30329952 catggtatcaaagcctatcgggtccatcgttgggcttgcatcgtccacgcttcaggcccgttgggaccgcgatgaagtgtgagggggtgtgtt 30330044  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 323
Target Start/End: Original strand, 33040362 - 33040452
Alignment:
232 atggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    |||||||| | | |||| || ||||||||||||||||||||||||| |||||||| || || || |||| | |||| |||||| ||||||||    
33040362 atggtatccgagcctatcggatccatcgttgggcttgcatcgtccacgcttcaggcccattcgg-ccgggctgaagcgtgaggaggtgtgtt 33040452  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 84022 - 83959
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttggg 295  Q
    |||||||||||   |||| ||||||||||||||||||||||| |||| |||||||| || |||||    
84022 catggtatcagatcctatcgggtccatcgttgggcttgcatc-tccacgcttcaggcccattggg 83959  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 16193912 - 16194001
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtg 321  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||| || |||| || | |||| |||||||||||||    
16193912 catggtatcagagtctatcgggtccatcgttgggcttgcatagtccacgcttcaggtccatt-ggacggggctgaagcgtgagggggtgtg 16194001  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 25184119 - 25184203
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgaggggg 317  Q
    ||||||||||| | |||| ||||||||||||||||||||||| |||| |||||||| || ||||| |||| | ||||||||||||||    
25184119 catggtatcagagcctatcgggtccatcgttgggcttgcatc-tccacgcttcaggcccattggg-ccgggctgaagtgtgaggggg 25184203  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 36495782 - 36495846
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttggg 295  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| || |||||    
36495782 catggtatcagagcctatcgggtccatcgttgggcttgcatcgtccatgcttcaggcccattggg 36495846  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 33909253 - 33909306
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttca 284  Q
    ||||||||||| | ||||  ||||||||||||||||||||||||||| ||||||    
33909253 catggtatcagagcctatcaggtccatcgttgggcttgcatcgtccacgcttca 33909306  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 19843599 - 19843653
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcag 285  Q
    ||||||||||| | |||| |||||||||||  ||||||||||||||| |||||||    
19843599 catggtatcagagcctatcgggtccatcgtatggcttgcatcgtccacgcttcag 19843653  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 36270685 - 36270591
Alignment:
231 catggtatcagggtctattgggtccatcgttgggctt---gcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||  | |||| ||||||||||||||||||   |||||||||| |||||||| || ||||| |||| | |||| ||||||| |||||||    
36270685 catggtatcaaagcctatcgggtccatcgttgggcttcaagcatcgtccacgcttcaggcccattggg-ccgggctgaagcgtgagggtgtgtgtt 36270591  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 37756153 - 37756060
Alignment:
231 catggtatcagggtctattgggtccatcgttgggct---tgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||| | |||| |||||||||||||||||   |||||| |||| |||||||| || ||||| |||| | |||| |||||||||||||||    
37756153 catggtatcagagcctatcgggtccatcgttgggcttcctgcatc-tccacgcttcaggcccattggg-ccgggctgaagcgtgagggggtgtgtt 37756060  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 10862046 - 10861955
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||| |||||||| || |||||  ||| | |||| |||||||||||||||    
10862046 catggtatcagagcctatcgggtccatcgttgggcttgcatcgtccacgcttcaggcccattggg-tcgggctgaagcgtgagggggtgtgtt 10861955  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 11350005 - 11349915
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||| | |||||||||||||||||||||||||||| |||| |||||||| || ||||| | || | |||| |||||||||||||||    
11350005 catggtatcagagcctattgggtccatcgttgggcttgcatc-tccacgcttcaggcccattggg-ctgggccgaagcgtgagggggtgtgtt 11349915  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 11350395 - 11350336
Alignment:
235 gtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttggg 295  Q
    ||||||| | |||||||||||||||||||||||||||| |||| |||||||| || |||||    
11350395 gtatcagagcctattgggtccatcgttgggcttgcatc-tccacgcttcaggcccattggg 11350336  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 15962145 - 15962056
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||| | |||| |||||||||||||||||| |||| |||| |||||||| || || ||||||| | |||| |||||||||||||||    
15962145 catggtatcagagcctatcgggtccatcgttgggctt-catc-tccacgcttcaggcccatt-ggaccgggctgaagcgtgagggggtgtgtt 15962056  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 28193563 - 28193499
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttggg 295  Q
    ||||||||||| | ||||  |||| |||||||||||||||||||||| |||||||| || |||||    
28193563 catggtatcagagcctatcaggtctatcgttgggcttgcatcgtccacgcttcaggcccattggg 28193499  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 17543760 - 17543851
Alignment:
18 acatacttaacttctacacttgcttaa-ttcttatttctctagtttcattccttcaccgcagacacatatacacaacttctcttgataataataa 111  Q
    ||||||||| ||||||| ||| ||| | ||||||||||||||||||||||||||||||| ||  ||||||||||||| |||||| ||||||||||    
17543760 acatacttagcttctactcttcctttacttcttatttctctagtttcattccttcaccgtag--acatatacacaac-tctcttaataataataa 17543851  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 10450636 - 10450546
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||| | |||||||||||||||||||||||||||| |||| |||||||| || ||| | |||| | |||| |||||||||||||||    
10450636 catggtatcagagcctattgggtccatcgttgggcttgcatc-tccacgcttcaggcccattgtg-ccgggctgaagcgtgagggggtgtgtt 10450546  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 40770123 - 40770060
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttggg 295  Q
    ||||||||||| |||||| ||||||||||||||||||||||| |||| ||||||||||| |||||    
40770123 catggtatcagagtctatcgggtccatcgttgggcttgcatc-tccacgcttcaggtccattggg 40770060  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 16051523 - 16051456
Alignment:
231 catggtatcagggtctattgggtccatcgttgggct---tgcatcgtccatgcttcaggtccgttggg 295  Q
    ||||||||||| | ||||||||||||||||||||||   |||||||||||||||||||| || |||||    
16051523 catggtatcagagcctattgggtccatcgttgggcttcctgcatcgtccatgcttcaggcccattggg 16051456  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 16060873 - 16060806
Alignment:
231 catggtatcagggtctattgggtccatcgttggg---cttgcatcgtccatgcttcaggtccgttggg 295  Q
    ||||||||||| | |||||||||||||| |||||   ||||||||||||| |||||||| || |||||    
16060873 catggtatcagagcctattgggtccatctttgggcttcttgcatcgtccacgcttcaggcccattggg 16060806  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 322
Target Start/End: Complemental strand, 48511627 - 48511535
Alignment:
231 catggtatcagggtctattgggtccatcgttgggct---tgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgt 322  Q
    ||||||||||| | |||| |||||||||||||||||   |||||| |||| |||||||| || ||||| |||| | |||| ||||||||||||||    
48511627 catggtatcagagcctatcgggtccatcgttgggcttcctgcatc-tccacgcttcaggcccattggg-ccgggctgaagcgtgagggggtgtgt 48511535  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 323
Target Start/End: Original strand, 45858771 - 45858862
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||| | |||||| || ||||| |||| | |||| ||||| |||||||||    
45858771 catggtatcagagcctatcgggtccatcgttgggcttgcatcgtccacgtttcaggcccattggg-ccgggctgaagcgtgagagggtgtgtt 45858862  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 40376997 - 40377026
Alignment:
102 ataataataataagggtcttgttaacgagt 131  Q
    ||||||||||||||||||||||||||||||    
40376997 ataataataataagggtcttgttaacgagt 40377026  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 31411537 - 31411505
Alignment:
250 gggtccatcgttgggcttgcatcgtccatgctt 282  Q
    |||||||||||||||||||||||||||| ||||    
31411537 gggtccatcgttgggcttgcatcgtccacgctt 31411505  T

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Target: scaffold0785 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 3108 - 3053
Alignment:
231 catggtatcagggtctattgggtccatcgttgggcttgcatcgtccatgcttcagg 286  Q
    ||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||||    
3108 catggtatcagagtctatcgggtccatcgttgggcttgcaccgtccacgcttcagg 3053  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 165693 - 165767
Alignment:
248 ttgggtccatcgttgggcttgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||||||||| ||||||||||||  ||||||| || ||||| |||| | |||| |||||||||||||||    
165693 ttgggtccatcgttgggtttgcatcgtccacacttcaggcccattggg-ccgggctgaagcgtgagggggtgtgtt 165767  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 8605381 - 8605473
Alignment:
233 tggtatcagggtctattgggtccatcgttgggct---tgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    ||||||||||  |||| |||||||||||||||||   ||||||||||| | |||||| || ||||| |||| | |||| |||||||||||||||    
8605381 tggtatcaggacctatcgggtccatcgttgggcttcctgcatcgtccacgattcaggcccattggg-ccgggctgaagcgtgagggggtgtgtt 8605473  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 38287952 - 38287858
Alignment:
231 catggtatcagggtctattgggtccatcgttgggct---tgcatcgtccatgcttcaggtccgttgggaccggacagaagtgtgagggggtgtgtt 323  Q
    |||| |||||| | ||||||||||||||||||||||   | ||||||||| |||||||| || || ||| ||| | |||| |||||||||||||||    
38287952 catgatatcagagcctattgggtccatcgttgggctttctacatcgtccacgcttcaggcccatt-ggatcgggctgaagcgtgagggggtgtgtt 38287858  T

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