View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18412_low_3 (Length: 666)

Name: NF18412_low_3
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18412_low_3
NF18412_low_3
[»] scaffold0197 (2 HSPs)
scaffold0197 (54-651)||(30353-30955)
scaffold0197 (8-56)||(28315-28363)
[»] chr7 (4 HSPs)
chr7 (206-651)||(21317073-21317517)
chr7 (8-176)||(21316815-21316983)
chr7 (8-137)||(21314030-21314159)
chr7 (454-639)||(3930158-3930343)
[»] chr2 (1 HSPs)
chr2 (450-645)||(13576090-13576285)
[»] chr8 (6 HSPs)
chr8 (453-639)||(43479871-43480057)
chr8 (454-639)||(26591914-26592099)
chr8 (455-639)||(38799242-38799426)
chr8 (455-639)||(38822091-38822275)
chr8 (454-642)||(25865446-25865634)
chr8 (454-642)||(41943690-41943878)
[»] chr5 (5 HSPs)
chr5 (455-645)||(12531239-12531429)
chr5 (455-645)||(12547190-12547380)
chr5 (456-639)||(9866853-9867038)
chr5 (536-645)||(9869843-9869952)
chr5 (446-631)||(9894390-9894572)
[»] chr4 (2 HSPs)
chr4 (454-639)||(24860292-24860477)
chr4 (454-630)||(34748501-34748677)


Alignment Details
Target: scaffold0197 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 54 - 651
Target Start/End: Original strand, 30353 - 30955
Alignment:
Q  54 taaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagttta-----cgatattgcgcttgagtcttattgaaaagaatcatatgcaaa 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |   |||     | ||||||||||||||||||||||||||||||||||||||||    
T  30353 taaatgaatgaggtgaggacaagtgaagtagttaacagtatcattcattcttatcaccccatattgcgcttgagtcttattgaaaagaatcatatgcaaa 30452  T
Q  149 tgtcgtaatgcaattccgagatatctatnnnnnnnnnnnnnnnnn-ttagagataccttattggttggtttcacatgccacggatcccgatcctatcacc 247  Q
    ||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30453 tgtcgtaatgcaattccgagatatctataaaaaaaaaaaaaaaaaattagagataccttattggttggtttcacatgccacggatcccgatcctatcacc 30552  T
Q  248 cttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcannnnnnnc 347  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  30553 cttcctgcaaagacgcacaaccgttgataactatttccatcaacggtcaccatctccccctttcaccttctcaaattttcccaattcccgcatttttttc 30652  T
Q  348 ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaaatattttctttctcttcaatttcttttc 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30653 ttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatcccaataacatctcaaa-tattttctttctcttcaatttcttttc 30751  T
Q  448 aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccg 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30752 aatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccaccaaagccgcacggaaatcagctccg 30851  T
Q  548 gcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaa 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30852 gcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaa 30951  T
Q  648 aact 651  Q
    ||||    
T  30952 aact 30955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 28315 - 28363
Alignment:
Q  8 cagcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28315 cagcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaa 28363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 206 - 651
Target Start/End: Original strand, 21317073 - 21317517
Alignment:
Q  206 tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21317073 tattggttggtttcacatgccacggatcccgatcctatcacccttcctgcaaagacgcacaaccgttgataactattcccatcaacggtcaccatctccc 21317172  T
Q  306 cctttcaccttctcaaattttcccaattcccgcannnnnnncttcaatcttctccgccctataaaacacccaaaacacttcttccaccatccatcatccc 405  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21317173 cctttcaccttctcaaattttcccaattcccgcatttttttcttcaatcttctccgccctataaaacacccaaaacacttcttccaacatccatcatccc 21317272  T
Q  406 aataacatctcaaaatattttctttctcttcaatttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca 505  Q
    |||||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21317273 aataacatctcaaa-tattttctttctctcagttttcttttcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagcccca 21317371  T
Q  506 cgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtg 605  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21317372 cgcaaacaactcgccaccaaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtg 21317471  T
Q  606 aaatccgcaagtaccagaagagcactgagcttctgataagaaaact 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21317472 aaatccgcaagtaccagaagagcactgagcttctgataagaaaact 21317517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 21316815 - 21316983
Alignment:
Q  8 cagcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttac 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  21316815 cagcagagacaaacctagggatgtcaaagtgaatggaacagataagtaaatgaatgaggtgaggacaagtgaattagttaacagtatcatgaaagtttat 21316914  T
Q  108 gatattgcgcttgagtcttattgaaaagaatcatatgcaaatgtcgtaatgcaattccgagatatctat 176  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21316915 gatattgcgctcgagtcttattgaaaagaatcatatacaaatgtcgtaatgcaattccgagatatctat 21316983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 21314030 - 21314159
Alignment:
Q  8 cagcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21314030 cagcagagacaaacctagggatgtcaaagtgaatggaaaagataagtaaatgaatgaggtgaggacaagtgaagtagttaacagtatcatgaaagtttat 21314129  T
Q  108 gatattgcgcttgagtcttattgaaaagaa 137  Q
    ||||||||||||||||||||||||||||||    
T  21314130 gatattgcgcttgagtcttattgaaaagaa 21314159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 454 - 639
Target Start/End: Complemental strand, 3930343 - 3930158
Alignment:
Q  454 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 553  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||| |||    
T  3930343 aatggcacgtaccaaacaaacagcacgaaaatccaccggaggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaacc 3930244  T
Q  554 ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttct 639  Q
    || || || ||||| |||||| | |||||||| ||||| || || |||||||| ||||||||||| |||||||||||||| |||||    
T  3930243 ggtggtgtaaagaaaccacacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttct 3930158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 450 - 645
Target Start/End: Original strand, 13576090 - 13576285
Alignment:
Q  450 tcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggc 549  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||    
T  13576090 tcaaaatggcacgtaccaaacaaacagcccgcaaatccaccggcggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggc 13576189  T
Q  550 gaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataag 645  Q
     ||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||    
T  13576190 caccggaggagtgaagaagccacatcgtttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataag 13576285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 453 - 639
Target Start/End: Complemental strand, 43480057 - 43479871
Alignment:
Q  453 aaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgac 552  Q
    ||||||| |||||||||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| |||||||| ||||||||||||||||| ||    
T  43480057 aaatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccac 43479958  T
Q  553 cggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttct 639  Q
    |||||||||||||||||||||| | |||||||| ||||| || || |||||||| ||||||||||| |||||||| || ||||||||    
T  43479957 cggaggagtgaagaagccacacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttct 43479871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 454 - 639
Target Start/End: Original strand, 26591914 - 26592099
Alignment:
Q  454 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 553  Q
    |||||||||||| || ||||| |||||||| ||||||||||| ||||| ||| | || || ||||| || |||||||| |||||||| ||||||||||||    
T  26591914 aatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgacc 26592013  T
Q  554 ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttct 639  Q
    || |||||||||||||||||||||||| | || |||||||| || || ||||| ||||||||||||||||||||||| || |||||    
T  26592014 ggcggagtgaagaagccacaccgtttcaggccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttct 26592099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 455 - 639
Target Start/End: Original strand, 38799242 - 38799426
Alignment:
Q  455 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 554  Q
    |||||||||||||| |||||||| ||||||||||||||||| || || || || || || |||||||| || ||||| ||||||||||||||||||||||    
T  38799242 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg 38799341  T
Q  555 gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttct 639  Q
    |||||||||||||||||||  | ||| | || ||||| || ||  |  | || ||||| ||||| ||||||||||||||||||||    
T  38799342 gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttct 38799426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 455 - 639
Target Start/End: Complemental strand, 38822275 - 38822091
Alignment:
Q  455 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 554  Q
    |||||||||||||| |||||||| ||||||||||||||||| || || || || || || |||||||| || ||||| ||||||||||||||||||||||    
T  38822275 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggctccccggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccg 38822176  T
Q  555 gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttct 639  Q
    |||||||||||||||||||  | ||| | || ||||| || ||  |  | || ||||| ||||| ||||||||||||||||||||    
T  38822175 gaggagtgaagaagccacatagattcagacctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttct 38822091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 454 - 642
Target Start/End: Original strand, 25865446 - 25865634
Alignment:
Q  454 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 553  Q
    |||||| ||||| || ||||| || ||||||||||||||||| || || ||| | || |||||||| || ||||| ||| ||||||| |||||  | |||    
T  25865446 aatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccacc 25865545  T
Q  554 ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgat 642  Q
    || |||||||||||||| || ||||  ||||| |||||||| || |||||||| ||||| ||||| |||||||| ||||||||| ||||    
T  25865546 ggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgat 25865634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 642
Target Start/End: Original strand, 41943690 - 41943878
Alignment:
Q  454 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 553  Q
    |||||| ||||| || ||||| || |||||||||||||| || || || ||| | || ||||| ||||| || || || || ||||| |||||  | |||    
T  41943690 aatggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctacaacc 41943789  T
Q  554 ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgat 642  Q
    || ||||| ||||| || || || |  ||||| || ||||| || |||||||| ||||| || ||||||||||| ||||| ||| ||||    
T  41943790 ggtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgat 41943878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 455 - 645
Target Start/End: Original strand, 12531239 - 12531429
Alignment:
Q  455 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 554  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || |||||||| |||||||| ||||    
T  12531239 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg 12531338  T
Q  555 gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataag 645  Q
    ||||||| |||||||||||| | |||||||| ||||| || || |||||||| ||||||||||||||||||||||| |||||||| |||||    
T  12531339 gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataag 12531429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 455 - 645
Target Start/End: Complemental strand, 12547380 - 12547190
Alignment:
Q  455 atggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccg 554  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||| ||| | || || || ||||||||||| || |||||||| |||||||| ||||    
T  12547380 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccg 12547281  T
Q  555 gaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataag 645  Q
    ||||||| |||||||||||| | |||||||| ||||| || || |||||||| ||||||||||||||||||||||| |||||||| |||||    
T  12547280 gaggagtcaagaagccacacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataag 12547190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 456 - 639
Target Start/End: Complemental strand, 9867038 - 9866853
Alignment:
Q  456 tggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgaccgg 555  Q
    ||||| ||||||||||||| || ||||||||||||||||| ||||| ||| | ||  | || ||||| ||||| || ||||||||||||||||| || ||    
T  9867038 tggcatgtaccaaacaaacggctcgcaaatccaccggcggtaaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacggg 9866939  T
Q  556 aggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgca--agtaccagaagagcactgagcttct 639  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |  ||||||| ||||||| |||||||||    
T  9866938 aggagtgaagaagccacaccgtttccgtcctggaaccgttgcgcttcgtgagatccgtaagagtaccaaaagagcattgagcttct 9866853  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 536 - 645
Target Start/End: Original strand, 9869843 - 9869952
Alignment:
Q  536 aaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagc 635  Q
    |||||||||| ||| ||||| | ||||||||| |||||| ||||| |||  |||||||| || |||||||| ||||| ||||||||||||||||||||||    
T  9869843 aaatcagctctggcaaccggggcagtgaagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagc 9869942  T
Q  636 ttctgataag 645  Q
    |||| |||||    
T  9869943 ttctaataag 9869952  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 446 - 631
Target Start/End: Original strand, 9894390 - 9894572
Alignment:
Q  446 tcaatcaaaatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctc 545  Q
    |||||||  |||||| ||||||| ||||||||||||||    || ||||| ||||| ||||| || || || ||||| |||||||| || ||||||||||    
T  9894390 tcaatcaccatggcaggtaccaagcaaacagcacgcaat---actggcggcaaagcaccacgaaagcagcttgccaccaaagccgctcgaaaatcagctc 9894486  T
Q  546 cggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcact 631  Q
     |||  |||||  ||||||||||||||||| |||  |||  ||||| || || |||||||| ||||| || ||||||| |||||||    
T  9894487 tggcagccggaacagtgaagaagccacaccatttttgtcatggaacggttgctcttcgtgagatccgtaattaccagaggagcact 9894572  T

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Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 454 - 639
Target Start/End: Original strand, 24860292 - 24860477
Alignment:
Q  454 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 553  Q
    |||||| ||||| || |||||||| |||||||||||||| |||||||| ||| | || || || || || |||||||| |||||||| ||||| || |||    
T  24860292 aatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccacc 24860391  T
Q  554 ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttct 639  Q
    || ||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||| ||||||||    
T  24860392 ggcggagtgaagaaacctcaccgtttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttct 24860477  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 454 - 630
Target Start/End: Original strand, 34748501 - 34748677
Alignment:
Q  454 aatggcacgtaccaaacaaacagcacgcaaatccaccggcggaaaagccccacgcaaacaactcgccactaaagccgcacggaaatcagctccggcgacc 553  Q
    ||||||||||||||| ||||| || ||||||||||| || || ||||| ||| | || ||||| ||||| |||||||| || ||||| |||||||| |||    
T  34748501 aatggcacgtaccaagcaaaccgctcgcaaatccactggaggtaaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccacc 34748600  T
Q  554 ggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcac 630  Q
    || ||||||||||| || ||||||||| | || |||||||| || || ||||| ||||| |||||||||||||||||    
T  34748601 ggtggagtgaagaaacctcaccgtttcagaccaggaaccgtcgctctacgtgagatccgtaagtaccagaagagcac 34748677  T

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