View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_31 (Length: 330)
Name: NF18412_low_31
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 13945845 - 13946153
Alignment:
| Q |
19 |
atacattcttcaaccattgaaatgtattccttcctcttaaagaattatcttgctcttaactagagcatgacacctaaggtttccatagtagtaccacttt |
118 |
Q |
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| T |
13945845 |
atacattcttcaaccattgaaatgtattccttcctcttaaagaattatcttgctcttaactagagcatgacacctaaggtttccatagtagtaccacttt |
13945944 |
T |
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| Q |
119 |
ggtgcaataatatcatttatttccctatctttttaccaagtagctagaagccactgttggttgtattcttctagtcccactagtgttagactccacctta |
218 |
Q |
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| T |
13945945 |
ggtgcaataatatcatttatttccctatctttttaccaagtagctagaagccactgttggttgtattcttctagtcccactagtgttagactccacctta |
13946044 |
T |
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| Q |
219 |
agctaagttttatccacctcaacttctaaacgtgtgcatccactttgtctttcatcttgtaacctccacctccaaggttaatcattagttttcttacctt |
318 |
Q |
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| T |
13946045 |
agctaagttttatccacctcaacttctaaacgtgtgcatccactttgtctttcatcttgtaacctccacctccaaggttaatcattagtgttcttacctt |
13946144 |
T |
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| Q |
319 |
tgcttctcc |
327 |
Q |
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| T |
13946145 |
tgcctctcc |
13946153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 31928880 - 31928973
Alignment:
| Q |
21 |
acattcttcaaccattgaaatgtattccttcctcttaaagaattatcttgctcttaactagagcatgacacctaaggtttccatagtagtacca |
114 |
Q |
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| T |
31928880 |
acattcttcaacccccgaaatgtctttcgtcctcttgaagaattctcttgctcacaactagagcatatcacccaaggtctccatagtcgtacca |
31928973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 39570349 - 39570410
Alignment:
| Q |
179 |
ttgtattcttctagtcccactagtgttagactccaccttaagctaagttttatccacctcaa |
240 |
Q |
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| T |
39570349 |
ttgtcttcttgtagtcccactaatggaagactccacctcaagctgagttttatctacctcaa |
39570410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 81 - 244
Target Start/End: Original strand, 14622853 - 14623016
Alignment:
| Q |
81 |
gagcatgacacctaaggtttccatagtagtaccactttggtgcaataatatcatttatttccctatctttttaccaagtagctagaagccactgttggtt |
180 |
Q |
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| T |
14622853 |
gagcatgacacccaaggtctccataatcgtactactttagtgcaataatatctattatttccctatctctttaccaaataactaggagccactgctggta |
14622952 |
T |
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| Q |
181 |
gtattcttctagtcccactagtgttagactccaccttaagctaagttttatccacctcaacttc |
244 |
Q |
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| T |
14622953 |
gtcttcttctagtcccactaatgtaagactctacctcaaactgagttttctccacctcaacttc |
14623016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 38281394 - 38281297
Alignment:
| Q |
189 |
ctagtcccactagtgttagactccaccttaagctaagttttatccacctcaacttctaaacgtgtgcatccactttgtctttcatcttgtaacctcca |
286 |
Q |
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| T |
38281394 |
ctagtcccactagtggaagactcaaactcaagttgagctttctccacctcaacttccaaatgtgtacatcctatatgtctttcaccttgtaacctcca |
38281297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 18198409 - 18198508
Alignment:
| Q |
189 |
ctagtcccactagtgttagactccaccttaagctaagttttatccacctcaacttctaaacgtgtgcatccactttgtctttcatcttgtaacctccacc |
288 |
Q |
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| T |
18198409 |
ctagtcccactagtggaagaatccacatcaagttgagttttctccacctcaactttcaaatgtgtacatccattttgactttcaccttgtaacctccacc |
18198508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 244
Target Start/End: Complemental strand, 16676983 - 16676819
Alignment:
| Q |
79 |
tagagcatgacacctaaggtttccatagtagtaccactttggtgcaataatatcatttatttccctatctttttaccaagtagctagaagccactgttgg |
178 |
Q |
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|||| ||| ||||| ||| ||| |||||| |||| |||| |||| | |||||| | |||| ||||||| |||||||| || | || ||||| | |||| |
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| T |
16676983 |
tagaacataacacccaagcttttcatagtcgtactacttaagtgcgacaatatccctcatttacctatctctttaccaa-tatcaaggagccatttttgg |
16676885 |
T |
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| Q |
179 |
ttgtattcttctagtcccactagtgttagactccaccttaagctaagttttatccacctcaacttc |
244 |
Q |
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| T |
16676884 |
ttgtcttcttatagtcctactagtggaagactccacctcaagttaggatttctccacctcaacttc |
16676819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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