View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_32 (Length: 329)
Name: NF18412_low_32
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_32 |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 131 - 323
Target Start/End: Original strand, 11313057 - 11313249
Alignment:
| Q |
131 |
cctgcacctgttaagcctcctgctccagtcacacctgcacctgtcaagcctcctgtctctattaaacctgctcctgtgaagcctactcctgttaagcctg |
230 |
Q |
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| T |
11313057 |
cctgcacctgttaagcctcctgctccagtcacgcctgcacctgtcaagcctcctgtctctattaaacctgctcctgttaagcctactcctgttaagcctg |
11313156 |
T |
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| Q |
231 |
gcccttttgtgcctaatccaatttctgtccatatccctgttatgcctatacctggtattactgtccctattacacctgcctttgctactcctc |
323 |
Q |
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| T |
11313157 |
gcccttttgtgcctaatccaatttccgtccatatccctgttatgcctatacctggtattactgtccctattacacctgcctttgttacgcctc |
11313249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 11312999 - 11313046
Alignment:
| Q |
4 |
tacccctcctacccctgttaaacctcctgtccctgttacacctcctac |
51 |
Q |
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| T |
11312999 |
tacccctcctacccctgttaaacctcctgtccctgttaaacctcctac |
11313046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 11313030 - 11313071
Alignment:
| Q |
86 |
cctgttaaacctcccactcatgttacgcctgcacctgttaag |
127 |
Q |
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| T |
11313030 |
cctgttaaacctcctactcatgttacgcctgcacctgttaag |
11313071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11312870 - 11312919
Alignment:
| Q |
1 |
tcgtacccctcctacccctgttaaacctcctgtccctgttacacctccta |
50 |
Q |
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| T |
11312870 |
tcgtacccctcctacccctattaagcctcgtgtccctgttacccctccta |
11312919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11312960 - 11313013
Alignment:
| Q |
1 |
tcgtacccctcctacccctgttaaacctcctgtccctgttacacctcctacccc |
54 |
Q |
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| T |
11312960 |
tcgtacccctcctacccctattaagtctcgtgtccctgttacccctcctacccc |
11313013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 306
Target Start/End: Original strand, 4185 - 4291
Alignment:
| Q |
203 |
cctgtgaagcctactcctgttaagcctggcccttttgtgcctaatccaatttctgtccatatccc---tgttatgcctatacctggtattactgtcccta |
299 |
Q |
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| T |
4185 |
cctgttaagcctgctcctgttaagcctagcccttttatgcctaatccaatttctattgatgtccctgttgttatgcctgtccctgttaatcctgtcccta |
4284 |
T |
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| Q |
300 |
ttacacc |
306 |
Q |
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| T |
4285 |
ttacacc |
4291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 21471869 - 21471922
Alignment:
| Q |
203 |
cctgtgaagcctactcctgttaagcctggcccttttgtgcctaatccaatttct |
256 |
Q |
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| T |
21471869 |
cctgttaagcctgctcctgttaagcctagcccttttacgcctaatccaatttct |
21471922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 2664848 - 2664951
Alignment:
| Q |
223 |
taagcctggcccttttgtgcctaatccaatttctgtccatatccc---tgttatgcctatacctggtattactgtccctattacacctgcctttgctact |
319 |
Q |
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| T |
2664848 |
taagcctggcctttttaggcctaatccaatttccgtcgatgtccctattgttatgcccattcctgttactcctgtccctattacgcctgtcgttgttact |
2664947 |
T |
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| Q |
320 |
cctc |
323 |
Q |
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|||| |
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| T |
2664948 |
cctc |
2664951 |
T |
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