View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_35 (Length: 326)
Name: NF18412_low_35
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 35524635 - 35524335
Alignment:
| Q |
11 |
caaaggtaccaaaactttttatgccggcaattatcaggtcgaactacaactgtcaaattttataaaagagagtaaagaacaaaagttccatgactattat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35524635 |
caaaggtaccaaaactttttatgccggcaattatcacgttgaactacaactgtcaaattttataaaagagagtaaagaacaaaagttccatgactattat |
35524536 |
T |
|
| Q |
111 |
gacagcgttaaaataatcgcacgatgtgcagtcatttatgaatgtcccatnnnnnnntgatgacagtataaatgcaaagcattgataaggaaaagaaatg |
210 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35524535 |
gacagtgttaaaataatcgcacgatgtgcagtcatttatgaatgttgcataaaaaaatgatgacagtataaatgcaaagcattgataaggaaaagaaatg |
35524436 |
T |
|
| Q |
211 |
aatgtggtcatctgactcacattcttcccatgtctctccatctgaattgcatccttttttgcagaatactcgccctacaattaaattaaacaagtaatat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35524435 |
aatgtggtcatctgactcacattcttcccatgtctctccatctgaattgcatccttttttgcagaatactcgccctacaattaaattaaacaagtaatat |
35524336 |
T |
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| Q |
311 |
t |
311 |
Q |
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| T |
35524335 |
t |
35524335 |
T |
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