View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_41 (Length: 272)
Name: NF18412_low_41
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 25589716 - 25589959
Alignment:
| Q |
18 |
attgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacctgagtgat |
117 |
Q |
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| T |
25589716 |
attgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacttgagtgat |
25589815 |
T |
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| Q |
118 |
atttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589816 |
atttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctcc |
25589915 |
T |
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| Q |
218 |
agcaaggggctgatctaactgtacaatctactcacaaggttctt |
261 |
Q |
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| T |
25589916 |
agcaaggggctgatctaactgtacaatctactcacaaggttctt |
25589959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 25599368 - 25599611
Alignment:
| Q |
18 |
attgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacctgagtgat |
117 |
Q |
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| T |
25599368 |
attgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacttgagtgat |
25599467 |
T |
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| Q |
118 |
atttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctcc |
217 |
Q |
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| T |
25599468 |
atttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctcc |
25599567 |
T |
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| Q |
218 |
agcaaggggctgatctaactgtacaatctactcacaaggttctt |
261 |
Q |
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| T |
25599568 |
agcaaggggctgatctaactgtacaatctactcacaaggttctt |
25599611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 25584833 - 25585076
Alignment:
| Q |
18 |
attgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacctgagtgat |
117 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |
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| T |
25584833 |
attgagtgctatccaggaactagaattggaaggaaaaaaagcagcagcagttttcatcacttcacctacttatcatggtatttgcagtaacttgagtgac |
25584932 |
T |
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| Q |
118 |
atttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctcc |
217 |
Q |
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||||| | ||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25584933 |
atttccgagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctcc |
25585032 |
T |
|
| Q |
218 |
agcaaggggctgatctaactgtacaatctactcacaaggttctt |
261 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25585033 |
agcaaggggctgatctaactgtacagtctactcacaaggttctt |
25585076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 10168181 - 10168241
Alignment:
| Q |
22 |
aatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcac |
82 |
Q |
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|||||||| || |||||||||||||||| || |||| |||| || ||||||||||||||| |
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| T |
10168181 |
aatgctatacacaaactagaattggaagggaaaaaagtagcaacaattttcatcacttcac |
10168241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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