View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_47 (Length: 256)
Name: NF18412_low_47
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_47 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 51120584 - 51120349
Alignment:
| Q |
17 |
aaagtaagttgatatcattaccgtagtaagtatatcgaaaggttgagggagttaaggttggagaatctatggaagagacgacgaaggaaacaaaagtgct |
116 |
Q |
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| T |
51120584 |
aaagtaagttgatatcattaccatagta----tatcgaaaggttgagggaattaaggttggagaatctatggaagagacgacgaaggaaacaaaagtgct |
51120489 |
T |
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| Q |
117 |
ttggagcacgtatagtgagagagaatcagagaaggttggtgatagagaggaactgcttcgagacaacggatagacgtttcaagtagctgttgctgatgtt |
216 |
Q |
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| T |
51120488 |
ttggagcacgtatagtgagagagaatcggagaaggttggtgatagagaggaactgcttcgagacaacggatagacgtttcaagtagctgttgctgatgtt |
51120389 |
T |
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| Q |
217 |
accgttgccatataggtgaggaatttgaagacacattccc |
256 |
Q |
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| T |
51120388 |
accgttgccatataggtgaggaatttgaagacacattccc |
51120349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 51113018 - 51112969
Alignment:
| Q |
134 |
agagagaatcagagaaggttggtgatagagaggaactgcttcgagacaac |
183 |
Q |
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| T |
51113018 |
agagagaatcggagacggttggtgatggagaggaaccgtttcgagacaac |
51112969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 28661022 - 28660967
Alignment:
| Q |
127 |
tatagtgagagagaatcagagaaggttggtgatagagaggaactgcttcgagacaa |
182 |
Q |
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| T |
28661022 |
tatagtgagcgagaatttgagaccgttggtgatagagaggaactgcttcgagacaa |
28660967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 6007659 - 6007711
Alignment:
| Q |
128 |
atagtgagagagaatcagagaaggttggtgatagagaggaactgcttcgagac |
180 |
Q |
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| T |
6007659 |
atagtgagagagaatcggagactgttggtgatggagaggaactgtttcgagac |
6007711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 1547517 - 1547461
Alignment:
| Q |
132 |
tgagagagaatcagagaaggttggtgatagagaggaactgcttcgagacaacggata |
188 |
Q |
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| T |
1547517 |
tgagagagaatcggagacggttggtgatggagaggaattgtttggagacaagggata |
1547461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 28935566 - 28935619
Alignment:
| Q |
127 |
tatagtgagagagaatcagagaaggttggtgatagagaggaactgcttcgagac |
180 |
Q |
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| T |
28935566 |
tatagtgagtgtgaatcggagactgttggtgatagagaggaactgtttcgagac |
28935619 |
T |
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