View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18412_low_48 (Length: 254)
Name: NF18412_low_48
Description: NF18412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18412_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 6185202 - 6185446
Alignment:
| Q |
1 |
cttttgctacttctgtaccttgaattcccattgaaagaccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactac |
100 |
Q |
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| T |
6185202 |
cttttgcaacttcagtaccttgaattcccattgaaagtccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactac |
6185301 |
T |
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| Q |
101 |
atgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatctctcttcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185302 |
atgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatctctcttcg |
6185401 |
T |
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| Q |
201 |
tgcgtaaagttgcgaaactgttcgccttcaaccaccgtttcatct |
245 |
Q |
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| T |
6185402 |
tgcgtaaagttgcgaaattgttcgccttcaaccaccgtttcatct |
6185446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4236078 - 4236321
Alignment:
| Q |
1 |
cttttgctacttctgtaccttgaattcccattgaaagaccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactac |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| |
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| T |
4236078 |
cttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttcaatgctggtgcatcgtttgttccgtctccggttacagcaactac |
4236177 |
T |
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| Q |
101 |
atgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatctctcttcg |
200 |
Q |
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| T |
4236178 |
atgacctttttgttttaagcattgtaccattagaagtttatcaaatggagaagatcttgccatcacagagattttctcaactttcgccaacctctcttcg |
4236277 |
T |
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| Q |
201 |
tgcgtaaagttgcgaaactgttcgccttcaaccaccgtttcatc |
244 |
Q |
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| T |
4236278 |
tgtgtgaagttacgaaattgttcgccttcaaccactgtttcatc |
4236321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 38357030 - 38357184
Alignment:
| Q |
9 |
acttctgtaccttgaattcccattgaaagaccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctt |
108 |
Q |
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| T |
38357030 |
acttcggttccttggattcccatagaaagtcctatatcagcttcttttaaggcaggtgcatcgtttgtgccgtcgcctgtgaccgcaactacatgacctt |
38357129 |
T |
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| Q |
109 |
tttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccat |
163 |
Q |
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| | | |||||||||| ||||| | ||||||||| | || |||||||||||||| |
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| T |
38357130 |
tctttcttaagcattgcaccatcaaaagtttgtccataggggatgatcttgccat |
38357184 |
T |
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Back To:
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